Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06] 20,982 sequences; 49,446,642 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1107 107 2e-18 seq2352 102 7e-17 >seq1107 Length=10776 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || || |||||||| || || || || || ||| || || || | || || Sbjct 5559 ACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 5500 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| ||||| || || ||||||||||||| ||| | || ||| |||||| | Sbjct 5499 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 5440 Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || || |||| ||| | | | || ||| |||||||| || | ||||| | || Sbjct 5439 ATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATTGTCTT 5381 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 ||||| || || || |||||||| |||||||| Sbjct 5380 CCCCGTGAGGGTCTTGACAAAGATCTGCATCTT 5348 >seq2352 Length=6378 Score = 102 bits (112), Expect = 7e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || |||| || || || |||| || ||||| || || ||||| Sbjct 1173 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAA 1232 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 ||||| ||||||||||| | ||| | || ||| |||||| ||| | | | | ||| Sbjct 1233 GATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC-TGAATCTTGGACTTCACGT 1291 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | |||||||||||||| || |||| ||||| | ||||| || || || || | Sbjct 1292 TGTCAATGGTATCGCTCGACTCGACCTCCAGAGTGATGGTCTTTCCAGTGAGAGTCTTGA 1351 Query 39272 CAAAGATTTGCAT 39284 ||||||| ||||| Sbjct 1352 CAAAGATCTGCAT 1364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429435757404566