Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06]
20,982 sequences; 49,446,642 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq8234 123 2e-23
seq2338 87.8 1e-12
>seq8234
Length=1651
Score = 123 bits (136), Expect = 2e-23
Identities = 204/290 (70%), Gaps = 7/290 (2%)
Strand=Plus/Minus
Query 29530 GTGAGGGTCGTAGCCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCCAC 29589
||||||||| ||||||| | |||||||| ||||| | |||| | ||| ||| |
Sbjct 609 GTGAGGGTCATAGCCCTTGATAACAAAATCCTCCGCCTTCCACCCGTCGATGCT-TCCGC 551
Query 29590 CCTCCTGT----TTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCC 29645
||| || | | ||| ||| |||||| | |||||| | ||| ||||| |
Sbjct 550 CCTTCTCTCGAGTAATCTCCAGCTCTGGAAAGTCACGGGGCTCGCGCTCAAGCTGCGTGT 491
Query 29646 TCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTG-GACAAACTCT 29704
| || | ||||||||||| ||||||||||| ||||| |||| | ||| | | ||
Sbjct 490 TGAGAGCATCCACGTGGTCGAGGTAGACGTGCGCATCGCCCATGACGTGAGTGAGGCT-G 432
Query 29705 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 29764
|| || | | || |||||| |||||||||| || || || | ||||||||| |||
Sbjct 431 CCAGGCACCAATTCGCAGACGTGCGCCATCATGTGTGTCAGCAGTGCGTAGCTGGCAATG 372
Query 29765 TTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCA 29814
|| || || || ||||| |||||||| | || | ||||||||| |||||
Sbjct 371 TTGAACGGGACGCCGAGACCCATGTCGCAGGATCGCTGGTAGAGTTGGCA 322
>seq2338
Length=6401
Score = 87.8 bits (96), Expect = 1e-12
Identities = 130/180 (72%), Gaps = 6/180 (3%)
Strand=Plus/Plus
Query 53494 CGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCATC-CT 53552
||||||||| | ||||||| ||| | || |||| |||||||||||||| || |
Sbjct 4840 CGTCAAGGTCCGTGTGAGGACGACCAAGATTCCCCAGATTGGCGACAAGTTTGCCTCTCG 4899
Query 53553 TCACGGCGCAAAAGGGGACATGCGGAGCG--GTCCTGACTCAGGAGGACATGCCCTTCGA 53610
|||||| || ||||| || || | | || | | ||||||||| |||||||||
Sbjct 4900 TCACGGA-CAGAAGGGTACCATTGGTGTGACGTACCG--TCAGGAGGATATGCCCTTCAG 4956
Query 53611 CAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGAC 53670
|| ||| || ||| || ||| | ||||| |||||||||||| |||| || | |||||
Sbjct 4957 CAGGGAGGGTGTGACACCGGACATTATCATTAACCCCCACGCCATTCCGTCGCGAATGAC 5016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406059336708052
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |