Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06]
20,982 sequences; 49,446,642 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq8234 113 3e-20
seq2338 82.4 6e-11
>seq8234
Length=1651
Score = 113 bits (124), Expect = 3e-20
Identities = 201/289 (70%), Gaps = 7/289 (2%)
Strand=Plus/Minus
Query 27025 TGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCCACC 27084
|||||||| || |||| | |||||||| ||||| | |||| | ||| ||| ||
Sbjct 608 TGAGGGTCATAGCCCTTGATAACAAAATCCTCCGCCTTCCACCCGTCGATGCT-TCCGCC 550
Query 27085 CTCCTGT----TTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTT 27140
|| || | | ||| ||| |||||| | |||||| | ||| ||||| || ||
Sbjct 549 CTTCTCTCGAGTAATCTCCAGCTCTGGAAAGTCACGGGGCTCGCGCTCAAGCTGCGTGTT 490
Query 27141 CAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTG-GACAAACTCTC 27199
|| | |||||||| || ||||||||||| || || |||| | ||| | | || |
Sbjct 489 GAGAGCATCCACGTGGTCGAGGTAGACGTGCGCATCGCCCATGACGTGAGTGAGGCT-GC 431
Query 27200 CCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGT 27259
| || | | || |||||| |||||||||| || || || | ||||||||| ||||
Sbjct 430 CAGGCACCAATTCGCAGACGTGCGCCATCATGTGTGTCAGCAGTGCGTAGCTGGCAATGT 371
Query 27260 TAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 27308
| || || || ||||| |||||||| | || | ||||||||| || ||
Sbjct 370 TGAACGGGACGCCGAGACCCATGTCGCAGGATCGCTGGTAGAGTTGGCA 322
>seq2338
Length=6401
Score = 82.4 bits (90), Expect = 6e-11
Identities = 130/180 (72%), Gaps = 6/180 (3%)
Strand=Plus/Plus
Query 48510 CGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGTGACAAGTTTGCGTC-CT 48568
||||||||| | ||||||| ||| | || |||| || ||||||||||| || |
Sbjct 4840 CGTCAAGGTCCGTGTGAGGACGACCAAGATTCCCCAGATTGGCGACAAGTTTGCCTCTCG 4899
Query 48569 TCACGGCGCAAAAGGGGACATGTGGAGCCGTCCTGACC--CAGGAGGACATGCCCTTCGA 48626
|||||| || ||||| || ||| | | | | ||| |||||||| |||||||||
Sbjct 4900 TCACGGA-CAGAAGGGTACCATTGGTGT-GACGT-ACCGTCAGGAGGATATGCCCTTCAG 4956
Query 48627 CAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGAC 48686
|| ||| || ||| || ||| | ||||| |||||||||||| |||| || | |||||
Sbjct 4957 CAGGGAGGGTGTGACACCGGACATTATCATTAACCCCCACGCCATTCCGTCGCGAATGAC 5016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369412710311642
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |