Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06] 20,982 sequences; 49,446,642 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq20342 159 8e-34 seq7999 145 2e-29 seq2352 136 1e-26 seq1107 136 1e-26 >seq20342 Length=208 Score = 159 bits (176), Expect = 8e-34 Identities = 148/188 (79%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || ||||| || || || ||||||||||||||||| || ||| Sbjct 190 CAAATCTTCGTGAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTGGAGTCTTCGGAC 131 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || |||||||||||||| || || ||||||||||||||||| Sbjct 130 ACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAGCAG 71 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || || || || ||| || Sbjct 70 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCGGACTACAACATC 11 Query 178104 CAAAAAGA 178111 || || || Sbjct 10 CAGAAGGA 3 >seq7999 Length=1671 Score = 145 bits (160), Expect = 2e-29 Identities = 140/180 (78%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||||||||| || || || || || || |||||||||||||| || ||| |||||||| Sbjct 168 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 227 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 || || ||||| ||||| |||||||| || || ||||| ||||||||||| ||||| Sbjct 228 TGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGACT 287 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||||||| || || ||||| || ||||| | || ||| |||| || ||| |||| || Sbjct 288 GATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTTTCCGACTACAACATCCAGAA 347 >seq2352 Length=6378 Score = 136 bits (150), Expect = 1e-26 Identities = 157/210 (75%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || || || || |||||||| ||||| || ||||| || ||||| || ||| Sbjct 1361 CAGATCTTTGTCAAGACTCTCACTGGAAAGACCATCACTCTGGAGGTCGAGTCGAGC--- 1305 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 || ||||| || ||||| || |||||||||||||| || || ||||| || |||||| Sbjct 1304 GATACCATTGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAG 1245 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || ||||||||||| || || || ||||| ||||| || | || || |||| || ||| Sbjct 1244 CAGCGACTTATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGTCCGACTACAAC 1185 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTT 178130 |||| || || || || || ||||||||| Sbjct 1184 ATCCAGAAGGAGTCGACCCTTCATCTTGTT 1155 Score = 131 bits (144), Expect = 4e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || || ||||||||||| || ||| || |||||||| || ||||| Sbjct 2071 ACGGGCAAGACCATTACCCTCGAGGTCGAGTCCTCGGATACCATCGACAATGTCAAGTCG 2012 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||||||||| || || ||||| || |||||||| || || || |||||||| || Sbjct 2011 AAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATTTTCGCCGGCAAG 1952 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| || ||||| | ||||| ||||||| ||| |||| || || || || || || Sbjct 1951 CAGCTTGAGGATGGCCGCACTCTCTCCGATTACAACATCCAGAAGGAGTCGACCCTCCAC 1892 Query 178125 CTTGT 178129 || || Sbjct 1891 CTCGT 1887 Score = 129 bits (142), Expect = 1e-24 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || ||||| || || || ||||||||||||||||| || ||||| |||| Sbjct 1810 TCGTCAAGACCCTCACTGGTAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACGATCG 1751 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | |||||||| ||||| || || || || || || ||||| |||||||| || || | Sbjct 1750 ACAACGTCAAGTCGAAGATCCAAGATAAGGAGGGTATTCCTCCTGACCAGCAGCGCCTGA 1691 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 | |||||||| || ||||| || ||||| | || || ||||| || || | || || | Sbjct 1690 TTTTCGCCGGCAAGCAGCTTGAGGATGGCCGAACCCTCGCCGACTACAATATTCAGAAGG 1631 Query 178111 AATCAACACTGCATCTTGT 178129 | ||||| || || || || Sbjct 1630 AGTCAACTCTCCACCTCGT 1612 >seq1107 Length=10776 Score = 136 bits (150), Expect = 1e-26 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || ||||||||||||||||| || ||| Sbjct 5354 CAGATCTTTGTCAAGACCCTCACGGGGAAGACAATCACCCTCGAGGTGGAGTCTTCCGAC 5413 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 5414 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAG 5473 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| || || || |||||||| ||||| | || || ||| || ||| || Sbjct 5474 CGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAACATC 5533 Query 178104 CAAAAAGA 178111 || || || Sbjct 5534 CAGAAGGA 5541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203407598684508