Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680525.1_202016-07-06]
20,982 sequences; 49,446,642 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq2352 147 2e-30
seq1107 140 3e-28
seq20342 136 4e-27
seq7999 116 3e-21
seq4960 82.4 7e-11
>seq2352
Length=6378
Score = 147 bits (162), Expect = 2e-30
Identities = 173/229 (76%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || ||||| | || ||||| || || ||||||||| ||||| ||||||||
Sbjct 1138 CCGCCACGGAGACGGAGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1197
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| || |||||||| || || || || || ||||| ||||| | |||
Sbjct 1198 AGGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCAGGGGGG 1257
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAG-TGTCGCTCGACTCCA 41813
| || |||||||||| ||| | || | ||||| || | || | | ||||||||||| |
Sbjct 1258 ATGCCCTCCTTGTCC-TGAATCTTGGACTTCA-CGTTGTCAATGGTATCGCTCGACTCGA 1315
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||| || || || || || || || ||||| || || ||||||||
Sbjct 1316 CCTCCAGAGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 1364
Score = 134 bits (148), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | ||||| ||||| || ||||||||| ||||| |||||| |
Sbjct 1366 CCACCGCGCAGACGAAGAACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTG 1425
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || |||| ||||||||||||||||| || || || |||||||| || | |||
Sbjct 1426 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGATCAGGAGGA 1485
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || ||||||||| || | || | || || | | | |||||| ||| |||||
Sbjct 1486 ATGCCTTCCTTGTCC-TGGATCTTCGATTTCACATTGTCAATGGTGTCGGACGATTCCAC 1544
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || || || || || || ||||| ||||| ||||||||
Sbjct 1545 CTCAAGGGTGATAGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 1592
Score = 116 bits (128), Expect = 3e-21
Identities = 137/183 (75%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
|||||||||||| || ||||||| |||||| || | || || |||||||||||||||||
Sbjct 1629 CTCCTTCTGAATATTGTAGTCGGCGAGGGTTCGGCCATCCTCAAGCTGCTTGCCGGCGAA 1688
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790
||||||||||| ||||| | |||| | |||||| || ||| || ||| |||
Sbjct 1689 AATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTATCTTGGATCTTCGACTT-GACGT 1747
Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849
| | | |||||| ||||||||||| | || || || ||||| || || ||||| |
Sbjct 1748 TGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCAGTGAGGGTCTTGA 1807
Query 41850 CGA 41852
|||
Sbjct 1808 CGA 1810
Score = 111 bits (122), Expect = 1e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || || || | || || || || || ||||||||| ||||| || |||||
Sbjct 1868 GCCACCACGAAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCGGA 1927
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||| ||||| | || || ||||||||||||||||| ||||||||||| ||||| | |||
Sbjct 1928 GAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGG 1987
Query 41755 AACGCTCTCCTTGTCC 41770
| || ||||||||||
Sbjct 1988 GATGCCCTCCTTGTCC 2003
>seq1107
Length=10776
Score = 140 bits (154), Expect = 3e-28
Identities = 171/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||||| || || |||||||||||||| ||||| ||||||
Sbjct 5577 CCACCACGCAGGCGGAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 5518
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || |||||||||||||| || || || || ||||| ||||| | |||
Sbjct 5517 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 5458
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| ||| || ||| ||| | | | |||||| ||||||||
Sbjct 5457 ATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCGGAAGACTCCAC 5399
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
||| | || || || || ||||| || ||||| || || |||||||| ||
Sbjct 5398 CTCGAGGGTGATTGTCTTCCCCGTGAGGGTCTTGACAAAGATCTGCATCTT 5348
>seq20342
Length=208
Score = 136 bits (150), Expect = 4e-27
Identities = 148/194 (76%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||||||||| ||||| ||||| | |||||||| |||| || |||||||||||||||||
Sbjct 2 CTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 61
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACG 41789
||||| ||||| ||||||| || | || |||||||||| ||| | || | |||||
Sbjct 62 GATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTCACAT 120
Query 41790 ACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849
| | ||||| ||||||||||| | || || || |||||||| || ||||| |
Sbjct 121 TCTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCA 180
Query 41850 CGAAAATCTGCATG 41863
|||| || ||||||
Sbjct 181 CGAAGATTTGCATG 194
>seq7999
Length=1671
Score = 116 bits (128), Expect = 3e-21
Identities = 137/183 (75%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| ||||| |||||||| ||||| || | || || ||||||||||| ||||| |
Sbjct 349 CCTTCTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 290
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792
|||| ||||| ||||||| ||| | || |||||||||| ||| || ||| || |
Sbjct 289 TCAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTT-GACATTG 231
Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851
| | ||||| ||||| ||||| | || || || || |||||||| ||||| |||
Sbjct 230 TCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACG 171
Query 41852 AAA 41854
|||
Sbjct 170 AAA 168
>seq4960
Length=3968
Score = 82.4 bits (90), Expect = 7e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859
|| || || || || ||||| |||||| ||||||| |||||| |||||| || |||
Sbjct 3667 CGCATTGCCCCCCGATCCGGTCTCGCCTCCAAGCACTTCATCGACACGGGCGCTGGTGTC 3608
Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCAC 85907
||||||||||||||| | || | |||| || | ||||||||||||
Sbjct 3607 ATCGACGCCGACTACAGAGGCCAGGTCAAGGTCCTCCTCTTCAACCAC 3560
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462182749218400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |