Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680605.1_202016-07-06] 25,286 sequences; 50,152,336 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq4896 140 7e-28 seq1975 87.8 4e-12 >seq4896 Length=3982 Score = 140 bits (154), Expect = 7e-28 Identities = 140/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 230452 GGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTT 230511 ||||||||||| || || ||| ||||||||||| ||||| ||||||||| | | || Sbjct 1321 GGCATGAACGCCGACCTCATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGTC 1262 Query 230512 GCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATT 230571 || || || ||||||| || ||||| | | |||||||| | || |||||| ||| Sbjct 1261 GCCCTCGGCAACGAGAAGGTCTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATC 1202 Query 230572 TCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGT 230631 || || || ||||||||||||||||| ||||||||| ||||||| |||| | ||||| Sbjct 1201 TCCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCAGAAGGCTGGT 1142 Query 230632 GT 230633 || Sbjct 1141 GT 1140 >seq1975 Length=6793 Score = 87.8 bits (96), Expect = 4e-12 Identities = 199/289 (69%), Gaps = 8/289 (3%) Strand=Plus/Plus Query 282393 ACGATAGGTGTGATGAACTTCTTCAAGAAACCTGGAAT-TTCTAG-GAGACTGGGAAAAC 282450 ||||| || |||||||||| | |||||| | |||| ||| || ||||| ||||| Sbjct 2732 ACGATGGGAGTGATGAACTCTTGCAAGAAGTCCGGAACCTTCAAGAGAGAC-GGGAACTG 2790 Query 282451 AGCTATGGAAAAAGTTCATGACAAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGG 282510 || || | ||||| || | ||||| || ||| |||| || |||| || | Sbjct 2791 GACT-TGAAGGAAGTTGATCAGGAGACCCTTGATATGACTTCCATCGTGATCCTGATCAG 2849 Query 282511 TCATGATCATCACATGACCGTATCTCAGAGAAGAAGTGTCTTTGTACACTTTACCGGTTT 282570 |||||||||||| ||| ||||||| ||| |||||| ||||||| | | | Sbjct 2850 TCATGATCATCAGATGGCCGTATCGAAGACTCTTGGTGTCTGTGTACACCTGCTTGTGCT 2909 Query 282571 GAAGGCCCAAAATTTGTTTGA-GCGCGGTGATTTCTTCGTTCTTTGTGATACTTG-CCAC 282628 || |||| | || |||| | | | |||||| | |||||| ||||| || | | || Sbjct 2910 TCAGACCCAGGAACTGCTTGATGTTCTG-GATTTCCTGGTTCTTGGTGAT-CTGGTCGAC 2967 Query 282629 AGATGCATCGCGAACGTTCAGCAACTTACCGCGGAGAGGAAAAACACCA 282677 |||||||| ||||| |||| |||||| ||||| || || |||||| Sbjct 2968 GCTGGCATCGCGGACGTTGAGCATCTTACCACGGAGTGGGAAGACACCA 3016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057481289486180