Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680605.1_202016-07-06] 25,286 sequences; 50,152,336 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4896 324 1e-83 seq1688 149 6e-31 seq9298 141 1e-28 seq2806 138 1e-27 >seq4896 Length=3982 Score = 324 bits (358), Expect = 1e-83 Identities = 563/809 (70%), Gaps = 25/809 (3%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||| | ||||||| | || || Sbjct 1996 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATTGATCTA 1937 Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | ||| ||| | | |||||| ||| || Sbjct 1936 TCCAAGGATCTCCA-CGACTGGAACAACCGCCTGACTGCCGACGAGCAGTTCTTCGTCTC 1878 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| | || ||||| ||||| ||| |||||||||||||||||||| || |||||||| Sbjct 1877 CCACATCCTCGCCTTCTTCGCTGCCTCTGACGGCATCGTCAACGAGAACCTTGTCGAGCG 1818 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| ||||| ||| | ||||||| || |||||||||||||| |||||| || Sbjct 1817 ATTCAGCGGCGAGGTCCAGATCCCCGAGGCCCGATGCTTCTACGGCTTCCAGATCATGAT 1758 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC------GTGC--GC 116923 ||||||| | ||||| || | || ||| |||||| ||||| ||| | || || Sbjct 1757 GGAGAACATCCACTCCGAGACCTACTCGCTCCTCATTGACACCTACATCAAGGAGCCAGC 1698 Query 116924 TCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAG 116983 || | ||| || | | || |||||||| ||||| || || || || || Sbjct 1697 TCAAC------GAACCTAC--CTCTTCAACGCCATTGAGACCATCCCCTGTATCCGCAAG 1646 Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-CCTTCGGCGAGCGCCT 117042 |||||||| ||||| | || |||||| | || ||| || |||| | |||| || Sbjct 1645 AAGGCCGACTGGGCCATCCGATGGATC-CAGGACAAGAACTCGTCCTTTGCTCAGCGTCT 1587 Query 117043 GGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTG 117102 || ||||| || ||||||||||| ||||||| || || ||| |||| || || Sbjct 1586 CGTCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTG 1527 Query 117103 GCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGA 117162 ||||||||| || ||||||||||| |||||||| || ||||||||||||||| | || Sbjct 1526 GCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGA 1467 Query 117163 CGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAG 117222 ||||||||| || ||||||||| || | || | || | | || | || Sbjct 1466 CGAGGGTCTTCACACCGACTTTGCATGCCTCCTCCACTCCCACCTCAAGGGCCGTGCCAG 1407 Query 117223 CGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCAC 117282 | | | | || ||| ||| ||||||| || ||| |||| |||||| ||||| || Sbjct 1406 CAAGCAGGTCATCCAGGACATCATCACCGATGCCGTCACCATTGAGCAGGAGTTCCTGAC 1347 Query 117283 CGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCG 117341 ||| || || || |||| ||||| || | || ||| ||| ||| ||||||| Sbjct 1346 CGAGGCCCT-CCCCTGCGCCCTGCTCGGCATGAACGCCGACCTCATGAAGCAGTACATCG 1288 Query 117342 AGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCA 117401 |||||||||||||| | || || ||| || | | || ||| |||||| | ||| Sbjct 1287 AGTTCGTCGCCGACCGCCTCCTCGTCGCCCTCGGCAACGAGAAGGTCTACAAGGCCACCA 1228 Query 117402 ACCCGCTGGACTTTATGAACCTCATCTCC 117430 |||| | ||||| ||| | ||||||| Sbjct 1227 ACCCCTTCGACTTCATGGAGAACATCTCC 1199 >seq1688 Length=7796 Score = 149 bits (164), Expect = 6e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || |||||||| || || |||||| |||| || || | Sbjct 5431 AAGATGCAGATCTTTGTCAAGACCCTCACGGGGAAGACAATCACCCTCGAGGTGGAGTCT 5372 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || || | ||||| |||||||||||| | || Sbjct 5371 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 5313 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| |||||||||| || ||||| ||||| || || | |||||||| | |||||| Sbjct 5312 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 5253 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| ||| || || || || | ||| || | || || Sbjct 5252 CAACATCCAGAAGGAGAGCACCCTCCACCTGGTCCTCCGCCTGCGTGGTGG 5202 >seq9298 Length=1639 Score = 141 bits (156), Expect = 1e-28 Identities = 140/181 (77%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| |||| ||||| || | |||| | | Sbjct 165 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATT 224 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||||||| |||||||||| ||||| Sbjct 225 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGACTG 284 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| |||||||| || | || ||||| ||||||||||||||||||| Sbjct 285 ATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTTTCCGACTACAACATCCAGAAG 344 Query 40879 G 40879 | Sbjct 345 G 345 >seq2806 Length=5600 Score = 138 bits (152), Expect = 1e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| || || |||||||| | || ||||| | | | Sbjct 1580 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACCATCACTCTGGAGGTCGAGTCGAGC 1639 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | ||| || |||| ||||| |||||||||||| | ||||| Sbjct 1640 GATACCATTGACAACG-TGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCA 1698 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||| |||| || || || |||||||| |||| |||||||| ||||||||| Sbjct 1699 GCAGCGACTTATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGTCCGACTACAA 1758 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || ||||| || Sbjct 1759 CATCCAGAAGGAGTCGACCCTTCATCTTGT 1788 Score = 118 bits (130), Expect = 1e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 |||||||| ||||| ||| |||| ||||| || | || | | | | | ||||| Sbjct 873 ACGGGCAAGACCATTACCCTCGAGGTCGAGTCCTCGGATACCATCGACAATGTCAAGTCG 932 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| |||||||||||| | |||||||| || || || | ||| ||||| Sbjct 933 AAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATTTTCGCCGGCAAG 992 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || || | ||||| ||| ||| |||||||||||||||||| | || || || Sbjct 993 CAGCTTGAGGATGGCCGCACTCTCTCCGATTACAACATCCAGAAGGAGTCGACCCTCCAC 1052 Query 40894 CTAGT 40898 || || Sbjct 1053 CTCGT 1057 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || || |||||| | || || ||| | || Sbjct 1352 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACTATCACCCTTGAGGTGGAATCGTCC 1411 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | || || || | ||||| || ||||| || | || || Sbjct 1412 GACACCATTGACAATGTGAAATCGAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAA 1471 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||||| || ||||| ||||| || |||| || || |||| |||||||||| Sbjct 1472 CAGCGACTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTCAGCGACTACAAC 1531 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || ||||| || || Sbjct 1532 ATCCAGAAGGAGTCGACTCTGCACCTGGT 1560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515056352091360