Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680605.1_202016-07-06]
25,286 sequences; 50,152,336 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq1688 129 5e-25
seq2806 104 2e-17
seq9298 87.8 1e-12
>seq1688
Length=7796
Score = 129 bits (142), Expect = 5e-25
Identities = 158/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || |||||||||||||| |||||||||||| |||| ||| | || ||
Sbjct 5220 ACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 5279
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || || || || | ||||| |||||||| || | ||||||||||||
Sbjct 5280 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 5339
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| | ||||||||| | ||| || |||||
Sbjct 5340 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATTGTCTTC 5399
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343
||||| || ||||| |||||||| ||||| ||||||
Sbjct 5400 CCCGTGAGGGTCTTGACAAAGATCTGCATCTTGCCT 5435
>seq2806
Length=5600
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||||||||| |||||||||||| ||| |||| |||| ||||| || || || || ||
Sbjct 1771 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAA 1712
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
|| | ||||| ||||| || || | |||||||||||| ||| || ||| ||
Sbjct 1711 GATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTT 1652
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | | | || | ||| ||||||| || || ||||| || || |||||||| ||
Sbjct 1651 GTCAATGGTATCGCTCGACTCGACCTCCAGAGTGATGGTCTTTCCAGTGAGAGTCTTGAC 1592
Query 45325 AAAGATTTGCAT 45336
|||||| |||||
Sbjct 1591 AAAGATCTGCAT 1580
Score = 86.0 bits (94), Expect = 5e-12
Identities = 121/170 (71%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||||||||| |||||||| ||| || ||| | || || || || || ||||||||
Sbjct 1040 CTCCTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAA 981
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
|||| ||||| |||||||| || | |||||||||||| ||| || ||| ||
Sbjct 980 AATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACATT 921
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCA 45314
| | | | ||| ||| ||||| | |||||| |||||||||||||
Sbjct 920 GTCGATGGTATCCGAGGACTCGACCTCGAGGGTAATGGTCTTGCCCGTCA 871
>seq9298
Length=1639
Score = 87.8 bits (96), Expect = 1e-12
Identities = 128/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206
||||||| |||||||||||| || || | || ||||| || || || ||||| |
Sbjct 345 CCTTCTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 286
Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266
||| ||||| ||||| || || | |||||||||||| || || ||| ||
Sbjct 285 TCAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 226
Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326
| | | ||||| ||| ||||| | ||| || |||||||||||||| |||||||| |
Sbjct 225 CAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 166
Query 45327 A 45327
|
Sbjct 165 A 165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 394953448441006
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |