Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680605.1_202016-07-06] 25,286 sequences; 50,152,336 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4896 248 1e-60 seq7620 161 1e-34 >seq4896 Length=3982 Score = 248 bits (274), Expect = 1e-60 Identities = 574/851 (67%), Gaps = 37/851 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| ||||||| || ||||| | ||| ||| | ||||| Sbjct 1996 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATTGATCTA 1937 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAG-AGTTTATA-- 125135 |||||||| || |||| ||| | | || |||||| | || |||| |||| | Sbjct 1936 TCCAAGGATCTCCACGACTGGAACAACCGCCTGACTG---CCGA-CGAGCAGTTCTTCGT 1881 Query 125136 -TCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGA 125193 || ||||| | |||||||| || | ||| || || ||||||||||| || || || || Sbjct 1880 CTCCCACATCCTCGCCTTCTTCGCTGCCTCTGACGGCATCGTCAACGAGAACCTTGTCGA 1821 Query 125194 CACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCA 125253 |||||| ||| | || || |||| ||||| ||||| ||||| |||| Sbjct 1820 G-CGATTCAGCGGCGAGGTCCAGATCCCCGAGGCCCGATGCTTCTACGGCTTCCAGATCA 1762 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC 125313 |||| |||||| | ||||| || | ||||| || ||||||| ||||| || | Sbjct 1761 TGATGGAGAACATCCACTCCGAGACCTACTCGCTCCTCATTGACACCTACATCAAGGAGC 1702 Query 125314 CG---CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAA 125370 | ||||| | || ||||| ||||| || || || | || | ||| || || | Sbjct 1701 CAGCTCAACGAACCTAC---CTCTTCAACGCCATTGAGACCATCCCCTGTATCCGCAAGA 1645 Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430 |||| | |||| || || |||||| | ||| | || || || | || | | || | Sbjct 1644 AGGCCGACTGGGCCATCCGATGGATCCAGGACAAGAACTCGTCCTTTGCTCAGCGTCTCG 1585 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490 | || || || ||||| ||||| |||||||| ||| ||||| ||||||| |||| Sbjct 1584 TCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGC 1525 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 |||||||||| || |||||||| || ||||| |||||| | || ||||| |||| Sbjct 1524 TCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGACG 1465 Query 125551 AGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCA 125610 |||| || ||| ||||||| ||| | || | | | | | || | || || Sbjct 1464 AGGGTCTTCACACCGACTTTG-CATGC--CTCCTCCACTCCCACCT------CAAGGGCC 1414 Query 125611 GATCCAGCGATGAAAAGGTCATC---AACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667 | ||||| | |||||||| |||| | ||||||||||| | || || || | Sbjct 1413 GTGCCAGC---AAGCAGGTCATCCAGGACATCATCACCGATGCCGTCACCATTGAGCAGG 1357 Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727 |||| || ||||| |||| || | | || | ||||||||| | | || ||| Sbjct 1356 AGTTCCTGACCGAGGCCCTCCCCTGCGCCCTGCTCGGCATGAACGCCGACCTCATGAAGC 1297 Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTT 125784 ||||||| ||||| || || || || || || || | ||| || ||| | | Sbjct 1296 AGTACATCGAGTTCGTCGCCGACCGCCTCCT---CGTCGCCCTCGGCAACGAGAAGGTCT 1240 Query 125785 ACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACT 125844 |||| |||| || ||||| || |||||| | ||| || || | || |||||||||| Sbjct 1239 ACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACT 1180 Query 125845 TTTTCGAGAAG 125855 | ||||||||| Sbjct 1179 TCTTCGAGAAG 1169 >seq7620 Length=2775 Score = 161 bits (178), Expect = 1e-34 Identities = 308/449 (69%), Gaps = 10/449 (2%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | ||| ||||| | || || |||||||| || Sbjct 1398 CAGGGTGGCAACAAGCGACCTGGTGCCTTTGCCATCTACCTTGAGCCCTGGCACGCAGAT 1339 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| || | || ||||||| ||| ||| || |||| || ||| | ||| Sbjct 1338 GTCTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCCCGCGAC 1279 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---AACGACGGTGGC 97052 |||| || |||||| | || ||| | ||||||||||| ||| || |||||| Sbjct 1278 CTGTTCCTGGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGTG-- 1221 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 |||||| ||| ||||| ||| || || ||||||||| |||| |||| ||||| ||| Sbjct 1220 -ACTGGACCCTCATGTGTCCCAACGAGTGCCCCGGTCTGGCCGACTGCTATGGCGAGGAG 1162 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGC 97171 || ||||| ||| || ||| | | |||| | || |||| | || | Sbjct 1161 TTCGAGGCTCTTTACGAAAAGTATGAGAAGGCGGGCAAGGGTCGCAAGACCA--TGAAGG 1104 Query 97172 ACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTC 97230 | |||| || ||| | |||||| | ||| ||| ||||| || | || | ||| | Sbjct 1103 CCCAGAAGCTCTGGTATGCCATCCTCGAGGCGCAGACCGAGACCGGCAACCCCTTCATGC 1044 Query 97231 TCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCT 97290 |||||||||| | || ||||| |||||||| || ||||||||||| ||| Sbjct 1043 TCTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCGTAGCT 984 Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTAC 97319 ||||||| ||||| || ||| | |||||| Sbjct 983 CCAATCTCTGCACCGAGATTATCGAGTAC 955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740824969713360