Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680605.1_202016-07-06] 25,286 sequences; 50,152,336 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4896 152 6e-32 >seq4896 Length=3982 Score = 152 bits (168), Expect = 6e-32 Identities = 372/558 (67%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 ||||| || ||| ||| ||||||||||| | | || || ||||||||||| || || Sbjct 1440 CATGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGG 1499 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| ||||||||||| || ||||| || ||||| || || | || |||||| Sbjct 1500 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAG 1559 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCGC-TGTCATGT 33480 || || || || ||||||||||| | || | || || | || | | |||| || Sbjct 1560 ATACCCTCGACGGCAGCAAAGGCGACGAGACGCTGAGCAAAGGACGAGTTCTTGTCCTGG 1619 Query 33481 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 ||||| | || ||||| ||||||||||| | ||| || || || || ||||| || Sbjct 1620 ATCCATCGGATG-GCCCAGTCGGCCTTCTTGCGGATACAGGGGATGGTCTCAATGGCGTT 1678 Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 ||||| ||| || || | || || | || || || || | || || | Sbjct 1679 GAAGAGGTAGGTTCGTTGAGCTGGCTCCTTGATGTAGGTGTCAATGAGGAGCGAGTAGGT 1738 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 || || || ||||| || || ||||| || |||||||| |||| ||||||| || Sbjct 1739 CTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGGGCCTCGGGGAT 1798 Query 33660 CTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGC 33719 ||| || || | ||||| || | | || || || || || |||||| ||| || Sbjct 1799 CTGGACCTCGCCGCTGAATCGCTCGACAAGGTTCTCGTTGACGATGCCGTCAGAGGCAGC 1858 Query 33720 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCA 33776 || || || | | || | || | | ||||| | || | | || ||||| Sbjct 1859 GAAGAAGGCGAGGATGTGGGAGACGAAGAACTGCTCGTCGGCAGTCAGGCGGTTGTTCCA 1918 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 || | || ||| || |||| ||| | || || | ||||| || || ||||| ||||| Sbjct 1919 GTCGTGGAGATCCTTGGATAGATCAATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTT 1978 Query 33837 TTTATACATGTTCCAGAT 33854 || ||||| | |||||| Sbjct 1979 CTTGTACATCTGCCAGAT 1996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622750301963760