Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680605.1_202016-07-06]
25,286 sequences; 50,152,336 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq4896 174 3e-38
seq2806 167 4e-36
seq1688 161 2e-34
seq7196 131 3e-25
seq9143 109 1e-18
seq12352 91.5 3e-13
>seq4896
Length=3982
Score = 174 bits (192), Expect = 3e-38
Identities = 564/865 (65%), Gaps = 23/865 (3%)
Strand=Plus/Plus
Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994
|| ||| || ||||||||||| || || || |||||||||||||| |||||| |
Sbjct 1136 CAGGACACCAGCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACC 1195
Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054
|||||| ||| |||||||||||| |||||||| ||| | ||| || ||
Sbjct 1196 GAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCC 1255
Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114
||| || || | |||||| || ||||||||||||||||| |||| ||||| | |||
Sbjct 1256 GAGGGCGACGAGGAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTT 1315
Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174
|||||| | || | |||||||| ||| ||| | ||| |||| || ||| ||| ||
Sbjct 1316 CATGCCGAGCAGGGCGCAGGGGAGGGCCTCGGTCAGGAACTCCTGCTCAATGGTGACGGC 1375
Query 10175 TTCCTCGACGATGCTCT---TTACC-ACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAAT 10230
|| || |||| || | ||| | | || || || || ||| | || |
Sbjct 1376 ATCGGTGATGATGTCCTGGATGACCTGCTTGCTGGCACGGC----CCTTGAGGTGGGAGT 1431
Query 10231 ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACA 10290
||||| | |||| | ||| || |||||||| || ||||| ||||||||| |
Sbjct 1432 GGAGGAGGCATGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAA 1491
Query 10291 AACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGG 10350
| ||| || |||||||| || || || |||||||| |||| | || | |||
Sbjct 1492 AGGTCAGGCCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGC 1551
Query 10351 AGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGA-GCGGTC- 10408
||| | | |||||| ||| | |||||||||| |||| || ||||| | | ||
Sbjct 1552 TGAAGAAGATACCCTCGACGGCAGCAAAGGCGACGAGACGCTGAGCAAAGGACGAGTTCT 1611
Query 10409 -GCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGA 10467
| | | || |||||| | |||||||| | | ||||| ||||| |
Sbjct 1612 TGTCCTGGATCCATCGGATGGCCCAGTCGGCCTTCTTGCGGATACAGGGGATGGTCTCAA 1671
Query 10468 TAGCCTCGAAGAGCTTGTTACGCTCGGTCTCG-TCCTCAATAAGAGCATCAAGGAGCAGG 10526
| || | |||||| | | | || | | || | |||| || | |||| ||| ||
Sbjct 1672 TGGCGTTGAAGAGGTAGGTTCG-TTGAGCTGGCTCCTTGATGTAGGTGTCAATGAGGAGC 1730
Query 10527 GAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATACGTGC 10585
||||| |||| ||||| | |||| | |||| | ||||||| ||| || ||
Sbjct 1731 GAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAT-CGGGC 1789
Query 10586 CGAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCATC 10645
| |||| | ||| || || || | | |||||||| | || ||||| ||
Sbjct 1790 CTCGGGGATCTGGACCTCGCCGCTGAATCGCTCGACAAGGTTCTCGTTGACGATGCCGTC 1849
Query 10646 GCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCA---- 10701
| | || |||||| |||||||||| || |||| |||| || | |||
Sbjct 1850 AGAGGCAGCGAAGAAGGCGAGGATGTGGGAGACGAAGAACTGCTCGTCGGCAGTCAGGCG 1909
Query 10702 GTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAG 10761
||| || |||||| | ||||| | || | | |||||| | ||||||||||
Sbjct 1910 GTTGTT----CCAGTCGTGGAGATCCTTGGATAGATCAATCTCCTCGGCAGTCCAGAAAG 1965
Query 10762 TGGCAACGGCCTTCTTGTACATCTG 10786
||| |||||||||||||||||||
Sbjct 1966 AGGCCTCGGCCTTCTTGTACATCTG 1990
>seq2806
Length=5600
Score = 167 bits (184), Expect = 4e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| || || | |||| ||| || || ||||| || |||||||| || ||| |
Sbjct 1578 CCACCGCGCAGACGAAGAACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTG 1519
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| ||||| || ||||||| ||||| || || |||
Sbjct 1518 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGATCAGGAGGA 1459
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|||||||||||||| || ||||| | || || || |||||||| | ||||| ||
Sbjct 1458 ATGCCTTCCTTGTCCTGGATCTTCGATTTCACATTGTCAATGGTGTCGGACGATTCCACC 1399
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||| || ||||| ||||||||||||||||| ||||||||
Sbjct 1398 TCAAGGGTGATAGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 1352
Score = 145 bits (160), Expect = 1e-29
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || |||||||| | || | ||| || || ||||| || |||||||| |||||||||
Sbjct 1075 CCACCACGAAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCGGAG 1016
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| |||||||| || || | || |||||||| ||
Sbjct 1015 AGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGGG 956
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||| | |||||| |||||||| || | || || ||
Sbjct 955 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCCGAGGACTCGACC 896
Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437
|| | ||| ||||| || |||||
Sbjct 895 TCGAGGGTAATGGTCTTGCCCGT 873
Score = 140 bits (154), Expect = 6e-28
Identities = 161/217 (74%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | || | ||| || || ||||| || || || || || |||| |
Sbjct 1350 CCACCACGGAGGCGGAGGACGAGGTGGAGAGTTGACTCCTTCTGAATATTGTAGTCGGCG 1291
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| |||||||| || || | || ||||| || |||
Sbjct 1290 AGGGTTCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGGAGGA 1231
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||| ||||| ||||| | ||||||| ||||| ||||| | || || ||
Sbjct 1230 ATACCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCGATCGTGTCGGAAGACTCCACC 1171
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451
|| | |||||| || || || ||||||||||||||||
Sbjct 1170 TCGAGGGTGATAGTCTTACCAGTGAGGGTCTTGACGA 1134
>seq1688
Length=7796
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | |||| ||| || ||| ||| || |||||||| || |||
Sbjct 5202 CCACCACGCAGGCGGAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 5261
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || || || ||||||| || |||||||| ||
Sbjct 5262 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 5321
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | ||||||| ||||||||||| | || || ||
Sbjct 5322 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 5381
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||| || || ||||||||||||||||| || ||||||||
Sbjct 5382 TCGAGGGTGATTGTCTTCCCCGTGAGGGTCTTGACAAAGATCTGCAT 5428
>seq7196
Length=2123
Score = 131 bits (144), Expect = 3e-25
Identities = 344/516 (67%), Gaps = 32/516 (6%)
Strand=Plus/Plus
Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040
|||||||||||||||| | ||||||| ||||||||||||| || || || ||||||
Sbjct 1588 CGCCACTGGATGTACTCGGAGGGGGTCTTGTCCAGGTGGTTATCGATGTGAGCGAAAGCG 1647
Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACA-CAGAGCCCCGAGTCGG 225099
||||| | ||| || || || ||||| |||| | | | | || || ||
Sbjct 1648 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTCGGTGGGG 1707
Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159
|| | ||| || |||||||| |||||||| || | |||||| ||||| ||||| || ||
Sbjct 1708 ATGAG-CTCACCAGTGAGGACGTTGATGAGGGTGGACTTGCCGGCACCGTTGGGACCGAT 1766
Query 225160 CACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTG-----CTGAAGATCTCA 225214
||| |||| ||||| || | ||| || | || | |||| | | |
Sbjct 1767 GACGGCAATACGGGAGCCCAGGGAGCACTGGAAGGAAATGTCGGTGATCTGAGGCTTGGA 1826
Query 225215 GGGCCAGTTTGGTAAGCAAAGGCCA------CGCCACGCAGCTTCATGATGGCACGGTCC 225268
|| | | |||| |||| || | ||||||| |||||| | ||
Sbjct 1827 GGTACCG--GGGTACTGGAAGGACATCTTGGTGGCACGCAG------GATGGCCTTGGCC 1878
Query 225269 TTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCC 225328
|||| | | |||||| ||||| |||||||| ||||| ||| | || | | | |
Sbjct 1879 TTGGTCTTGACACCCTCGAGGAAACCGGGCTCAGGGAAGGAGAACTCGATCTCGGAGGCA 1938
Query 225329 TTCAGGTCGTAGTAAGAT---GCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTT 225385
|| |||||||||||| |||| ||| ||| || |||||||||| ||||||
Sbjct 1939 CCGAGCTCGTAGTAAGATCGGGCAG--AGGGGACGCGCTG-GACGAAAGCAGCCAGGTTA 1995
Query 225386 CCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGC 225444
|| || | ||||||||| | |||||| || ||||| ||| | ||| ||
Sbjct 1996 CCCTTGTAGCGCTTGAGCTTGAAG---CGCTCGTAGTGGACAATGTGCTG-GCAGACGTT 2051
Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGA 225480
||| |||||||||||||||||||| || ||||||||
Sbjct 2052 GTCGAGGAAGCCAGAGTCGTGGGAGACGATGATGGA 2087
>seq9143
Length=2656
Score = 109 bits (120), Expect = 1e-18
Identities = 430/669 (64%), Gaps = 17/669 (3%)
Strand=Plus/Plus
Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037
|| |||||||| | |||||||||||||||| | || || || |||| | || | | |
Sbjct 674 TAACGCCACTGAAGGTACTGGTTGGGGGTCTTCTCGAGATGCATCTCGACGTGCTCCAGA 733
Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097
|| ||||| | ||| | || |||| |||||| |||||| || || |||
Sbjct 734 GCGTGCTGCTTGATGTAGCCGATACGCAAGTTGGGGTGCTTCTCGACCTTTCCGGTAGTA 793
Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157
|| | |||||||||||| | |||||| || |||| |||||| || || |||||||||
Sbjct 794 GGAATGGTCTCGCCGGTGAGCAACTTGATCAGGGTAGACTTGCCAGCTCCGTTGGGGCCA 853
Query 225158 ATCACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGT--TGCTGA-AGATCTCA 225214
|| | | ||| ||||| |||| || | ||| | || | ||| || | ||
Sbjct 854 ATGATGGCAACACGGGACGACAGTGTCAGCTGGCAAGAGACCTCATGCAGAGAAGGCTTG 913
Query 225215 GGGCCAGTTTGGTAAGCAAAGGCCAC----GCCACGCAGCTTCATGATGGCACGGTCCTT 225270
|| | | |||| | | | ||| | || || | ||||||||||| | |
Sbjct 914 GGAGCCTTGGGGTACGTGTACGACACGTTGGACATGCGG----ATGATGGCACGAGTCAT 969
Query 225271 GGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTT 225330
||| | | || ||||| ||||| ||||||| ||| | | | ||
Sbjct 970 GGACTTGACGCCAGTCAGGATACCGGGGGGAGGGAACTTGAACTGGACGTTGGAGGCCGA 1029
Query 225331 CAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGAG 225390
||| |||||| |||||||| || | | || || |||| |||||| ||
Sbjct 1030 CAGAGTGTAGTAGCTCTTGGCCTCGGGGCGGATCTCGACAAAGGCAGCCAGGTTGCCCTT 1089
Query 225391 GTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAG 225450
|| | ||||| ||| |||||| || || | | | || ||| ||
Sbjct 1090 GTAGCAAGCCAGCTTCTTGTTGGGCTCGTAGTGGTAGATGTCGGTGGTGACGTTGTCGAG 1149
Query 225451 GAAGCCAGAGTCGTGGGACACAAT--GATGGACGACACGTTCGTCAGGCCCTTGAGGTGC 225508
||||||||||||||| || ||||| || | || | | | || ||||||||
Sbjct 1150 GAAGCCAGAGTCGTGAGAAACAATCAGACTGGTGATATCTGGATGAG--TCTTGAGGTAG 1207
Query 225509 GTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGG 225568
| |||||| || | |||| || || | ||||| |||||||||||||| || |||
Sbjct 1208 TTCTCGAGCCACGCAATGTTGGCAACATCAAGATGGTTGGTAGGTTCGTCCAGGAGAAGG 1267
Query 225569 ATGTCAGCATCAATG-AGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGA 225627
| |||||| | || || ||||| || | |||| ||||||||| ||||| || || ||
Sbjct 1268 ACATCAGCA-CGCTGAAGCATGGCTCGGGCTAGAGCCAGCTTCATCTTCCAACCACCAGA 1326
Query 225628 CAGGGAGCC 225636
|| ||||||
Sbjct 1327 CAAGGAGCC 1335
>seq12352
Length=1753
Score = 91.5 bits (100), Expect = 3e-13
Identities = 170/247 (69%), Gaps = 2/247 (1%)
Strand=Plus/Minus
Query 225751 GGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCT-GAG 225809
|||||| || | | ||| | ||| | |||||| || ||| | || ||| || || |
Sbjct 1420 GGTCATCTCAGTGTCAGCAGAGTCCAGGTCGTGCTCGACGAAGACGGTCTTGACCTCGCT 1361
Query 225810 AAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGC 225869
|| | |||||| ||||| | ||| | || || ||||| | || || |||||
Sbjct 1360 CTGCTT-GGGGAAACCCTCAACCTGCTCGTTGTTGATGGCACGCATGAGAGTGGACTTGC 1302
Query 225870 CCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGG 225929
| | |||||||||||| || ||||| | | || ||||||| | |||| | ||
Sbjct 1301 CGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGGCCACGCTTGAGGCGGAGGTGAGTCT 1242
Query 225930 AGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCAC 225989
||| || || |||||| |||| |||||||| ||||| || | ||| || |||||||
Sbjct 1241 GGTTGAGCAGAATCTTGGCACCGTAGGCAAGAGAGAAAGTACAGTTGCAAAGATCCTCAC 1182
Query 225990 CCTCCTC 225996
|||||||
Sbjct 1181 CCTCCTC 1175
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921331098199920
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