Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680605.1_202016-07-06] 25,286 sequences; 50,152,336 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq4896 174 3e-38 seq2806 167 4e-36 seq1688 161 2e-34 seq7196 131 3e-25 seq9143 109 1e-18 seq12352 91.5 3e-13 >seq4896 Length=3982 Score = 174 bits (192), Expect = 3e-38 Identities = 564/865 (65%), Gaps = 23/865 (3%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 || ||| || ||||||||||| || || || |||||||||||||| |||||| | Sbjct 1136 CAGGACACCAGCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACC 1195 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 |||||| ||| |||||||||||| |||||||| ||| | ||| || || Sbjct 1196 GAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCC 1255 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 ||| || || | |||||| || ||||||||||||||||| |||| ||||| | ||| Sbjct 1256 GAGGGCGACGAGGAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTT 1315 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 |||||| | || | |||||||| ||| ||| | ||| |||| || ||| ||| || Sbjct 1316 CATGCCGAGCAGGGCGCAGGGGAGGGCCTCGGTCAGGAACTCCTGCTCAATGGTGACGGC 1375 Query 10175 TTCCTCGACGATGCTCT---TTACC-ACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAAT 10230 || || |||| || | ||| | | || || || || ||| | || | Sbjct 1376 ATCGGTGATGATGTCCTGGATGACCTGCTTGCTGGCACGGC----CCTTGAGGTGGGAGT 1431 Query 10231 ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACA 10290 ||||| | |||| | ||| || |||||||| || ||||| ||||||||| | Sbjct 1432 GGAGGAGGCATGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAA 1491 Query 10291 AACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGG 10350 | ||| || |||||||| || || || |||||||| |||| | || | ||| Sbjct 1492 AGGTCAGGCCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGC 1551 Query 10351 AGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGA-GCGGTC- 10408 ||| | | |||||| ||| | |||||||||| |||| || ||||| | | || Sbjct 1552 TGAAGAAGATACCCTCGACGGCAGCAAAGGCGACGAGACGCTGAGCAAAGGACGAGTTCT 1611 Query 10409 -GCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGA 10467 | | | || |||||| | |||||||| | | ||||| ||||| | Sbjct 1612 TGTCCTGGATCCATCGGATGGCCCAGTCGGCCTTCTTGCGGATACAGGGGATGGTCTCAA 1671 Query 10468 TAGCCTCGAAGAGCTTGTTACGCTCGGTCTCG-TCCTCAATAAGAGCATCAAGGAGCAGG 10526 | || | |||||| | | | || | | || | |||| || | |||| ||| || Sbjct 1672 TGGCGTTGAAGAGGTAGGTTCG-TTGAGCTGGCTCCTTGATGTAGGTGTCAATGAGGAGC 1730 Query 10527 GAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATACGTGC 10585 ||||| |||| ||||| | |||| | |||| | ||||||| ||| || || Sbjct 1731 GAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAT-CGGGC 1789 Query 10586 CGAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCATC 10645 | |||| | ||| || || || | | |||||||| | || ||||| || Sbjct 1790 CTCGGGGATCTGGACCTCGCCGCTGAATCGCTCGACAAGGTTCTCGTTGACGATGCCGTC 1849 Query 10646 GCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCA---- 10701 | | || |||||| |||||||||| || |||| |||| || | ||| Sbjct 1850 AGAGGCAGCGAAGAAGGCGAGGATGTGGGAGACGAAGAACTGCTCGTCGGCAGTCAGGCG 1909 Query 10702 GTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAG 10761 ||| || |||||| | ||||| | || | | |||||| | |||||||||| Sbjct 1910 GTTGTT----CCAGTCGTGGAGATCCTTGGATAGATCAATCTCCTCGGCAGTCCAGAAAG 1965 Query 10762 TGGCAACGGCCTTCTTGTACATCTG 10786 ||| ||||||||||||||||||| Sbjct 1966 AGGCCTCGGCCTTCTTGTACATCTG 1990 >seq2806 Length=5600 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | |||| ||| || || ||||| || |||||||| || ||| | Sbjct 1578 CCACCGCGCAGACGAAGAACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTG 1519 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| ||||| || ||||||| ||||| || || ||| Sbjct 1518 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGATCAGGAGGA 1459 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| | || || || |||||||| | ||||| || Sbjct 1458 ATGCCTTCCTTGTCCTGGATCTTCGATTTCACATTGTCAATGGTGTCGGACGATTCCACC 1399 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || ||||| ||||||||||||||||| |||||||| Sbjct 1398 TCAAGGGTGATAGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 1352 Score = 145 bits (160), Expect = 1e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || || ||||| || |||||||| ||||||||| Sbjct 1075 CCACCACGAAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCGGAG 1016 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || |||||||| || Sbjct 1015 AGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGGG 956 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | |||||| |||||||| || | || || || Sbjct 955 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCCGAGGACTCGACC 896 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | ||| ||||| || ||||| Sbjct 895 TCGAGGGTAATGGTCTTGCCCGT 873 Score = 140 bits (154), Expect = 6e-28 Identities = 161/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || || ||||| || || || || || |||| | Sbjct 1350 CCACCACGGAGGCGGAGGACGAGGTGGAGAGTTGACTCCTTCTGAATATTGTAGTCGGCG 1291 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || ||||| || ||| Sbjct 1290 AGGGTTCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGGAGGA 1231 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| ||||| ||||| | ||||||| ||||| ||||| | || || || Sbjct 1230 ATACCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCGATCGTGTCGGAAGACTCCACC 1171 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | |||||| || || || |||||||||||||||| Sbjct 1170 TCGAGGGTGATAGTCTTACCAGTGAGGGTCTTGACGA 1134 >seq1688 Length=7796 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||| ||| || ||| ||| || |||||||| || ||| Sbjct 5202 CCACCACGCAGGCGGAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 5261 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || ||||||| || |||||||| || Sbjct 5262 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 5321 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 5322 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 5381 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || ||||||||||||||||| || |||||||| Sbjct 5382 TCGAGGGTGATTGTCTTCCCCGTGAGGGTCTTGACAAAGATCTGCAT 5428 >seq7196 Length=2123 Score = 131 bits (144), Expect = 3e-25 Identities = 344/516 (67%), Gaps = 32/516 (6%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | ||||||| ||||||||||||| || || || |||||| Sbjct 1588 CGCCACTGGATGTACTCGGAGGGGGTCTTGTCCAGGTGGTTATCGATGTGAGCGAAAGCG 1647 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACA-CAGAGCCCCGAGTCGG 225099 ||||| | ||| || || || ||||| |||| | | | | || || || Sbjct 1648 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTCGGTGGGG 1707 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || | ||| || |||||||| |||||||| || | |||||| ||||| ||||| || || Sbjct 1708 ATGAG-CTCACCAGTGAGGACGTTGATGAGGGTGGACTTGCCGGCACCGTTGGGACCGAT 1766 Query 225160 CACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTG-----CTGAAGATCTCA 225214 ||| |||| ||||| || | ||| || | || | |||| | | | Sbjct 1767 GACGGCAATACGGGAGCCCAGGGAGCACTGGAAGGAAATGTCGGTGATCTGAGGCTTGGA 1826 Query 225215 GGGCCAGTTTGGTAAGCAAAGGCCA------CGCCACGCAGCTTCATGATGGCACGGTCC 225268 || | | |||| |||| || | ||||||| |||||| | || Sbjct 1827 GGTACCG--GGGTACTGGAAGGACATCTTGGTGGCACGCAG------GATGGCCTTGGCC 1878 Query 225269 TTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCC 225328 |||| | | |||||| ||||| |||||||| ||||| ||| | || | | | | Sbjct 1879 TTGGTCTTGACACCCTCGAGGAAACCGGGCTCAGGGAAGGAGAACTCGATCTCGGAGGCA 1938 Query 225329 TTCAGGTCGTAGTAAGAT---GCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTT 225385 || |||||||||||| |||| ||| ||| || |||||||||| |||||| Sbjct 1939 CCGAGCTCGTAGTAAGATCGGGCAG--AGGGGACGCGCTG-GACGAAAGCAGCCAGGTTA 1995 Query 225386 CCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGC 225444 || || | ||||||||| | |||||| || ||||| ||| | ||| || Sbjct 1996 CCCTTGTAGCGCTTGAGCTTGAAG---CGCTCGTAGTGGACAATGTGCTG-GCAGACGTT 2051 Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGA 225480 ||| |||||||||||||||||||| || |||||||| Sbjct 2052 GTCGAGGAAGCCAGAGTCGTGGGAGACGATGATGGA 2087 >seq9143 Length=2656 Score = 109 bits (120), Expect = 1e-18 Identities = 430/669 (64%), Gaps = 17/669 (3%) Strand=Plus/Plus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||||| | |||||||||||||||| | || || || |||| | || | | | Sbjct 674 TAACGCCACTGAAGGTACTGGTTGGGGGTCTTCTCGAGATGCATCTCGACGTGCTCCAGA 733 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097 || ||||| | ||| | || |||| |||||| |||||| || || ||| Sbjct 734 GCGTGCTGCTTGATGTAGCCGATACGCAAGTTGGGGTGCTTCTCGACCTTTCCGGTAGTA 793 Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157 || | |||||||||||| | |||||| || |||| |||||| || || ||||||||| Sbjct 794 GGAATGGTCTCGCCGGTGAGCAACTTGATCAGGGTAGACTTGCCAGCTCCGTTGGGGCCA 853 Query 225158 ATCACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGT--TGCTGA-AGATCTCA 225214 || | | ||| ||||| |||| || | ||| | || | ||| || | || Sbjct 854 ATGATGGCAACACGGGACGACAGTGTCAGCTGGCAAGAGACCTCATGCAGAGAAGGCTTG 913 Query 225215 GGGCCAGTTTGGTAAGCAAAGGCCAC----GCCACGCAGCTTCATGATGGCACGGTCCTT 225270 || | | |||| | | | ||| | || || | ||||||||||| | | Sbjct 914 GGAGCCTTGGGGTACGTGTACGACACGTTGGACATGCGG----ATGATGGCACGAGTCAT 969 Query 225271 GGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTT 225330 ||| | | || ||||| ||||| ||||||| ||| | | | || Sbjct 970 GGACTTGACGCCAGTCAGGATACCGGGGGGAGGGAACTTGAACTGGACGTTGGAGGCCGA 1029 Query 225331 CAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGAG 225390 ||| |||||| |||||||| || | | || || |||| |||||| || Sbjct 1030 CAGAGTGTAGTAGCTCTTGGCCTCGGGGCGGATCTCGACAAAGGCAGCCAGGTTGCCCTT 1089 Query 225391 GTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAG 225450 || | ||||| ||| |||||| || || | | | || ||| || Sbjct 1090 GTAGCAAGCCAGCTTCTTGTTGGGCTCGTAGTGGTAGATGTCGGTGGTGACGTTGTCGAG 1149 Query 225451 GAAGCCAGAGTCGTGGGACACAAT--GATGGACGACACGTTCGTCAGGCCCTTGAGGTGC 225508 ||||||||||||||| || ||||| || | || | | | || |||||||| Sbjct 1150 GAAGCCAGAGTCGTGAGAAACAATCAGACTGGTGATATCTGGATGAG--TCTTGAGGTAG 1207 Query 225509 GTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGG 225568 | |||||| || | |||| || || | ||||| |||||||||||||| || ||| Sbjct 1208 TTCTCGAGCCACGCAATGTTGGCAACATCAAGATGGTTGGTAGGTTCGTCCAGGAGAAGG 1267 Query 225569 ATGTCAGCATCAATG-AGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGA 225627 | |||||| | || || ||||| || | |||| ||||||||| ||||| || || || Sbjct 1268 ACATCAGCA-CGCTGAAGCATGGCTCGGGCTAGAGCCAGCTTCATCTTCCAACCACCAGA 1326 Query 225628 CAGGGAGCC 225636 || |||||| Sbjct 1327 CAAGGAGCC 1335 >seq12352 Length=1753 Score = 91.5 bits (100), Expect = 3e-13 Identities = 170/247 (69%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 225751 GGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCT-GAG 225809 |||||| || | | ||| | ||| | |||||| || ||| | || ||| || || | Sbjct 1420 GGTCATCTCAGTGTCAGCAGAGTCCAGGTCGTGCTCGACGAAGACGGTCTTGACCTCGCT 1361 Query 225810 AAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGC 225869 || | |||||| ||||| | ||| | || || ||||| | || || ||||| Sbjct 1360 CTGCTT-GGGGAAACCCTCAACCTGCTCGTTGTTGATGGCACGCATGAGAGTGGACTTGC 1302 Query 225870 CCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGG 225929 | | |||||||||||| || ||||| | | || ||||||| | |||| | || Sbjct 1301 CGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGGCCACGCTTGAGGCGGAGGTGAGTCT 1242 Query 225930 AGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCAC 225989 ||| || || |||||| |||| |||||||| ||||| || | ||| || ||||||| Sbjct 1241 GGTTGAGCAGAATCTTGGCACCGTAGGCAAGAGAGAAAGTACAGTTGCAAAGATCCTCAC 1182 Query 225990 CCTCCTC 225996 ||||||| Sbjct 1181 CCTCCTC 1175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921331098199920