Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680605.1_202016-07-06]
25,286 sequences; 50,152,336 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq2806 125 7e-24
seq4896 109 5e-19
seq1688 104 2e-17
>seq2806
Length=5600
Score = 125 bits (138), Expect = 7e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| ||| | ||| | || | | |||||||| || ||||||||||||||
Sbjct 1578 CCACCGCGCAGACGAAGAACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTG 1519
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||||||||| || || |||| | |||| || |||||||| || |||||
Sbjct 1518 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGATCAGGAGGA 1459
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| ||||| ||||| ||| || ||| | |||| || | |||||||| ||| |||||
Sbjct 1458 ATGCCTTCCTTGTCCTGGATCTTCGATTTCACATTG-TCAATGGTGTCGGACGATTCCAC 1400
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | || || || || || || || || || ||||||||
Sbjct 1399 CTCAAGGGTGATAGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 1352
Score = 111 bits (122), Expect = 2e-19
Identities = 164/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| || | ||| | ||| | ||| | | | |||||||| || |||||||||||| |
Sbjct 1806 CCGCCACGGAGACGGAGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1747
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||| || || || ||||| | | |||| || ||||| ||||| || ||
Sbjct 1746 AGGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCAGGGGGG 1687
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565
|| || || ||||| ||| | || | || | ||| || | ||| ||| ||||||| |
Sbjct 1686 ATGCCCTCCTTGTC-CTGAATCTTGGACTTCACGTTG-TCAATGGTATCGCTCGACTCGA 1629
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| | || | || || ||||| ||||| || ||||| ||||||||
Sbjct 1628 CCTCCAGAGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 1580
>seq4896
Length=3982
Score = 109 bits (120), Expect = 5e-19
Identities = 332/508 (65%), Gaps = 19/508 (4%)
Strand=Plus/Minus
Query 52338 CGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACGCTGGCCGAG 52397
||||| ||||| | ||||| || |||||| || | | | | | | | || ||
Sbjct 1651 CGCAAGAAGGCCGACTGGGCCATCCGATGGATCCAGGACAAGAACTCGTCCTTTGCTCAG 1592
Query 52398 CGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATC 52457
|| | || ||||| || |||||||| | || || ||| ||||||| |||||
Sbjct 1591 CGTCTCGTCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATC 1532
Query 52458 TTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCG 52517
|| | | || | | ||| | ||||| |||||||| || ||||||| | || ||
Sbjct 1531 TTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTTTCCAACGAGCTCATCTCT 1472
Query 52518 CGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCT---ACTACAAG----ACGCGCGT 52570
|| ||||| || || ||||| |||||||| |||||| ||| | | | | |||
Sbjct 1471 CGTGACGAGGGTCTTCACACCGACTTTGCATGCCTCCTCCACTCCCACCTCAAGGGCCGT 1412
Query 52571 GACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGA 52630
| | | || | | || || ||| | ||| ||| || || || | || ||
Sbjct 1411 GCCAGCAA----GCA---GGTCA---TCCAGGACATCATCACCGATGCCGTCACCATTGA 1362
Query 52631 AAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCAT 52690
||||||| | || | || || || || ||||| ||||||||||| | |||
Sbjct 1361 GCAGGAGTTCCTGACCGAGGCCCTCCCCTGCGCCCTGCTCGGCATGAACGCCGACCTCAT 1302
Query 52691 GTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AAGT 52749
| ||||||||||||| || || || || || | || ||||| || | | |||
Sbjct 1301 GAAGCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGTCGCCCTCGG-CAACGAGAAGG 1243
Query 52750 ACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCA 52809
|| ||| || ||| || || || || ||| | ||||| || || | ||||||||||
Sbjct 1242 TCTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCAAGACCA 1183
Query 52810 ACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
|||| ||||||||||| ||||| || ||
Sbjct 1182 ACTTCTTCGAGAAGCGTGTCGGTGACTA 1155
>seq1688
Length=7796
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| || |||||||||||||||| || || |||||||| || || || | | |
Sbjct 5237 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 5296
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542
||| || ||||| ||||| || || || || || ||||| ||| || || | |
Sbjct 5297 GATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 5356
Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602
|| | |||||||| ||||||||||||| || | || || || || || || || ||
Sbjct 5357 GTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATTGTCTTCCCCGTGAGGGTCTTGAC 5416
Query 138603 AAAAATCTGCAT 138614
||| ||||||||
Sbjct 5417 AAAGATCTGCAT 5428
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496105543861920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |