Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680605.1_202016-07-06]
25,286 sequences; 50,152,336 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq1688 120 3e-22
seq9298 100 3e-16
seq2806 100 3e-16
>seq1688
Length=7796
Score = 120 bits (132), Expect = 3e-22
Identities = 144/193 (75%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981
||| || || || ||||| |||| || ||||| ||| || ||||| || ||||| |
Sbjct 5237 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 5296
Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040
||| | ||||||||| ||||| || ||||||||||||||| ||| || ||||| |||
Sbjct 5297 GATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 5356
Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100
| |||| |||||| | | ||| || |||| ||| | || || || || || || || |
Sbjct 5357 G-TCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATTGTCTTCCCCGTGAGGGTCTTGA 5415
Query 127101 CAAAAATCTGCAT 127113
|||| ||||||||
Sbjct 5416 CAAAGATCTGCAT 5428
>seq9298
Length=1639
Score = 100 bits (110), Expect = 3e-16
Identities = 111/148 (75%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017
||| || ||||| || |||||| |||||| ||||||||| || || || |||||||||||
Sbjct 311 ATCCTCCAGCTGCTTGCCAGCGAAGATCAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTT 252
Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
|||| ||| || ||||| | || | |||||||| |||||| |||| ||| |
Sbjct 251 GTCCTGGATCTTGGACTTGACATTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGAT 192
Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
|| ||||| ||||| || || || |||
Sbjct 191 GGTCTTGCCCGTCAGGGTCTTCACGAAA 164
>seq2806
Length=5600
Score = 100 bits (110), Expect = 3e-16
Identities = 127/175 (73%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||||||| | ||||| ||| || ||||| || ||
Sbjct 1045 GTCGACTCCTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCG 986
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| | |||| |||||||| ||||| || ||||||||||||||| || ||| ||||
Sbjct 985 GCGAAAATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGAATCTTCGACTTG 926
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091
| | |||| ||| |||| |||||| |||| ||| | || ||||| ||||
Sbjct 925 ACATTGTCGATGGTATCCGAGGACTCGACCTCGAGGGTAATGGTCTTGCCCGTCA 871
Score = 93.3 bits (102), Expect = 4e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| ||| || |||||| || || ||||| || |||
Sbjct 1776 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCTTCCAGCTGCTTACCA 1717
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| |||| | ||||||||| || || || ||||||||||||||| || || |||
Sbjct 1716 GCAAAGATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTC 1657
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| || | ||| || | |||||| || | || | || || || || |||||
Sbjct 1656 ACGTTG-TCAATGGTATCGCTCGACTCGACCTCCAGAGTGATGGTCTTTCCAGTGAGAGT 1598
Query 127096 TTTTACAAAAATCTGCAT 127113
|| ||||| ||||||||
Sbjct 1597 CTTGACAAAGATCTGCAT 1580
Score = 89.7 bits (98), Expect = 5e-13
Identities = 133/186 (72%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || ||||||||||| ||| | | || || ||| || ||||| || ||
Sbjct 1320 GTTGACTCCTTCTGAATATTGTAGTCGGCGAGGGTTCGGCCATCCTCAAGCTGCTTGCCG 1261
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| | |||| |||||||| || ||||| || |||||||| || ||| ||| ||||
Sbjct 1260 GCGAAAATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTATCTTGGATCTTCGACTTG 1201
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| |||| ||||| | | ||| || |||| ||| | || || || || || ||
Sbjct 1200 ACGTTG-TCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCAGTGAGGGT 1142
Query 127096 TTTTAC 127101
|| ||
Sbjct 1141 CTTGAC 1136
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475350506084640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |