Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680605.1_202016-07-06] 25,286 sequences; 50,152,336 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4896 143 3e-29 >seq4896 Length=3982 Score = 143 bits (158), Expect = 3e-29 Identities = 531/820 (65%), Gaps = 29/820 (4%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||| ||||| ||| ||||| ||| |||||||| Sbjct 1154 GTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCAT 1213 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGAGG 127345 || || || ||||| | | || | | | |||| || | |||| Sbjct 1214 GAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-----CCGAGGGCGACGAGG 1268 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405 || || || | |||| |||| ||||||| ||| || | |||||| |||| ||| Sbjct 1269 AGGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGCAGG 1328 Query 127406 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG 127465 || ||||| || || | |||| ||| ||||||| || || || | |||| Sbjct 1329 GCGCAGGGGAGGGCCTCGGTCAGGAACTCCTGCTCAATGGTGACGGCATCGGTGATGATG 1388 Query 127466 GCGTGAATAGTGTCCACCC---CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCA 127522 | || || | | | || | | ||| | | | || ||| || ||| Sbjct 1389 TCCTGGATGACCTGCTTGCTGGCACGGCCCTTGAGGTGGGAGTGGAGGAGG--CAT-GCA 1445 Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || || ||| |||||||||||||| |||||||| || || || ||| ||| || ||| Sbjct 1446 AAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCAGGC 1505 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 ||||| || |||||||| | |||||| || | ||| | || ||||||||| ||| Sbjct 1506 ATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCC 1565 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAAACCA 127701 || || || || || | ||||||| |||||||| || | |||| | | ||| Sbjct 1566 TCGACGGCAGCAAAGGCGACGAGACGCTGAGCAAAGGA-CGAGTTCTTGTCCTGGATCCA 1624 Query 127702 CTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAG 127761 || ||||| | ||||| || |||||| |||| ||||| || || | ||||| Sbjct 1625 TCGGATGGCCCAGTCGGCCTTCTTGCGGATACAGGGGATGGTCTCAATGGCGTTGAAGAG 1684 Query 127762 TTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCC 127821 | | || | ||| || |||||||| | || ||||| || || || ||| Sbjct 1685 GTAGGTTCGTTGAGCTGGCTCCTTGATGTAGGTGTCAATGAGGAGCGAGTAGGTCTCGGA 1744 Query 127822 GTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTA 127880 ||||| | | ||| || | ||| | ||||||| | || || ||| ||||| | Sbjct 1745 GTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCATCGGGCCTCGGGGATCTGGA 1803 Query 127881 CCTCATCGGCAAAATTGTTATTGATA---TTCTCAAAAACAATTCCATCGGACCCAGCAA 127937 |||| | || ||| | | || | ||||| || || || || || |||| | Sbjct 1804 CCTC-GCCGCTGAATCG--CTCGACAAGGTTCTCGTTGACGATGCCGTCAGAGGCAGCGA 1860 Query 127938 AAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGT 127994 | || || ||||| | | ||| ||| || | | ||| || | ||||||| Sbjct 1861 AGAAGGCGAGGATGTGGGAGACGAAGAACTGCTCGTCGGCAGTCAGGCGGTTGTTCCAGT 1920 Query 127995 CGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 ||| ||||||||| || ||||| | |||||| |||||||| Sbjct 1921 CGTGGAGATCCTTGGATAGATCAATCTCCTCGGCAGTCCA 1960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613313285711760