Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680605.1_202016-07-06] 25,286 sequences; 50,152,336 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4896 268 9e-67 seq1688 125 7e-24 seq2806 122 9e-23 seq9298 114 1e-20 >seq4896 Length=3982 Score = 268 bits (296), Expect = 9e-67 Identities = 566/831 (68%), Gaps = 29/831 (3%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || | | ||| ||| | ||| || || ||||||||| Sbjct 1170 TTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTG 1229 Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | |||||| ||| | |||||| || ||||||| || | |||||| |||||| Sbjct 1230 GTGGCCTTGTAGACCTTCTCGTTGCCGA---GGGCGACGAGGAGGCGGTCGGCGACGAAC 1286 Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTC 132800 |||||||| ||| |||| ||| || | || ||||| |||| || || || || Sbjct 1287 TCGATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGCAGGGCGCAGGGG-AGGGCCTC 1345 Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCC---TAACGCGC-- 132855 ||| || || ||||| |||| ||| || ||||||| ||| ||| | || || Sbjct 1346 GGTCAGGAACTCCTGCTCAATGGTGACGGCATCGGTGATGATGTCCTGGATGACCTGCTT 1405 Query 132856 GCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAG 132915 || | || ||||| ||| | || | | | ||| ||||||||| || | Sbjct 1406 GCTG-GCACGGCCCTTG----AGGTGGGAGTGGAGGAGGCATGCAAAGTCGGTGTGAAGA 1460 Query 132916 CCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTT 132975 |||||||| | || ||||| |||||| || |||| ||| ||||||||||| || || Sbjct 1461 CCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCAGGCATGAGGCCACGCTTC 1520 Query 132976 TTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAA 133035 |||||||| || |||| ||| || || ||||||| ||||||||||| || || Sbjct 1521 TTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCAGCAAAG 1580 Query 133036 GCCACCAGGCGCTCGCCGAACGTGGC-TTCTT-TGCTGGCGATCCAGCGCAGCGCCCATT 133093 || || || |||| | || | | ||||| | |||| ||||| || | ||||| | Sbjct 1581 GCGACGAGACGCTGAGCAAAGGACGAGTTCTTGTCCTGG--ATCCATCGGATGGCCCAGT 1638 Query 133094 CGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTT 133153 ||||||| | || || || || || || |||||||| || | | || ||| | Sbjct 1639 CGGCCTTCTTGCGGATACAGGGGATGGTCTCAATGGCGTTGAAGAG--GTAGGTTCGTTG 1696 Query 133154 CCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTC 133211 || | | ||||||||| |||||| ||| || | || ||||| | |||||| Sbjct 1697 AGCTGGCTCCTTGATGTAGGTGTCAATGAGGAGCGAGTAGGTCTCGGAGTGGATGTTCTC 1756 Query 133212 CATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAA 133271 ||| ||| || |||||||| ||||| || |||||| | ||| || || ||| Sbjct 1757 CATCATGATCTGGAAGCCGTAGAAGCATCGGGCCTCGGGGATCTGGACCTCGCCGCTGAA 1816 Query 133272 ACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTG 133331 |||||||| || || ||||||||||||||||| ||| ||||| ||||| || | ||| Sbjct 1817 TCGCTCGACAAGGTTCTCGTTGACGATGCCGTCAGAGGCAGCGAAGAAGGCGAGGATGTG 1876 Query 133332 CTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGA 133388 || ||| |||||| | | ||| ||| | ||||||| | |||||||| Sbjct 1877 GGAGACGAAGAACTGCTCGTCGGCAGTCAGGCGGTTGTTCCAGTCGTGGAGATCCTTGGA 1936 Query 133389 CAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 || || | ||||||| | ||||| || || |||||||| || |||||||| Sbjct 1937 TAGATCAATCTCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACAT 1987 >seq1688 Length=7796 Score = 125 bits (138), Expect = 7e-24 Identities = 163/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || |||||||| || || |||||| |||| || ||| | Sbjct 5431 AAGATGCAGATCTTTGTCAAGACCCTCACGGGGAAGACAATCACCCTCGAGGTGGAGTCT 5372 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || || |||| ||||| ||||| || ||| |||| Sbjct 5371 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGA 5313 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| ||||| | || ||||| ||||| || || | |||||||| | |||||| Sbjct 5312 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 5253 Query 38420 CAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| ||| || || || |||| || || Sbjct 5252 CAACATCCAGAAGGAGAGC-ACCCTCCACCTGGTCCTCCG 5214 >seq2806 Length=5600 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || || |||||| | || || || | || Sbjct 1352 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACTATCACCCTTGAGGTGGAATCGTCC 1411 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | ||| || |||| ||||| || || ||||| | || ||| Sbjct 1412 GACACCATTGACAATGTGAAATCGAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAA 1471 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | || ||||| ||||| || |||| || || |||| |||||||||| Sbjct 1472 CAGCGACTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTCAGCGACTACAAC 1531 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| |||| ||||| |||| || ||| || | || || Sbjct 1532 ATCCAGAAGGAGTCGACTCTGCACCTGGTTCTTCGTCTGCGCGGTGG 1578 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| || || |||||||| | || |||||| | | | Sbjct 1580 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACCATCACTCTGGAGGTCGAGTCGAGC 1639 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || || || | ||||| ||||| || ||| | ||||| Sbjct 1640 GATACCATTGACAACG-TGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCA 1698 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || |||||||| |||| |||||||| ||||||||| Sbjct 1699 GCAGCGACTTATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGTCCGACTACAA 1758 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||| || ||| | || || ||| | | ||||| Sbjct 1759 CATCCAGAAGGAGTCGACCCTTCATCTTGTTCTCCGTCTCCGTGGCGG 1806 Score = 102 bits (112), Expect = 8e-17 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327 |||||||| ||||| ||| |||| |||||| || | || | | | | | | || Sbjct 873 ACGGGCAAGACCATTACCCTCGAGGTCGAGTCCTCGGATACCATCGACAATGTCAAGTCG 932 Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || || | ||||| ||||| || ||| ||||||| ||||| || |||| ||| ||||| Sbjct 933 AAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATTTTCGCCGGCAAG 992 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 ||||| || || | ||||| ||| ||| ||||||||||| ||||| |||| || || Sbjct 993 CAGCTTGAGGATGGCCGCACTCTCTCCGATTACAACATCCAGAAGGAGTCGACCCTCCA 1051 >seq9298 Length=1639 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| |||| |||||| || | |||| | | Sbjct 165 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATT 224 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| || ||| | ||||| ||||| || Sbjct 225 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGACTG 284 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| |||||||| || | || ||||| ||||||||||||||| ||| Sbjct 285 ATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTTTCCGACTACAACATCCAGAAG 344 Query 38433 G 38433 | Sbjct 345 G 345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500014707882240