Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680605.1_202016-07-06] 25,286 sequences; 50,152,336 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq9567 138 1e-27 seq4896 95.1 1e-14 >seq9567 Length=2195 Score = 138 bits (152), Expect = 1e-27 Identities = 318/466 (68%), Gaps = 26/466 (6%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 ||||| || || || || || | | || | || || ||||| | ||||| ||| || Sbjct 1635 CGATCAAATCGTCCAGGTCGCATCAAGGCCTTGTCGAGCATATCCGCTCGGTTGGTACCG 1576 Query 11563 GCAATGACTACAATGCCAG-TCTCAT-TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGT 11620 || | ||| |||| || | || | ||| |||||||||||| || || |||| ||||| Sbjct 1575 GCCAGGACGACAA--CCTGCTCCCGGGTGTTGAAACCGTCCATCTCGGTCAGAATCTGGT 1518 Query 11621 TGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCTTAC--- 11677 | | ||| || ||||| |||||| | ||| || ||| || || || | Sbjct 1517 TCAGAGTCGCCTCCCGCTCGTCGTTGCCACCGAAACC-CCGGCC--ACTCTCCTGTCGCG 1461 Query 11678 --CGACA----GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCT 11731 |||| ||||| ||||||||||| || | ||| || || ||| ||| | | Sbjct 1460 CTCGACCAATGGCGTCGATCTCATCGATAAAGATGATGCAAGGAGCGTTCTTACGGCCTT 1401 Query 11732 GTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG 11791 |||| || || || ||||| | |||||||| || |||||||| ||||| | | Sbjct 1400 CGGCGAACAGGTCTCGCACACGGGAAGGACCAACACCAACAAACATCTCGACGAATTCAG 1341 Query 11792 --CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAG 11849 | || | ||||||| |||||| || |||||| ||||| | || ||||| | Sbjct 1340 AACCGCTCA-CACTGAA-GAAGGGGACTCCAGACTCGCCAGCTGTAGCCTTGGCGAGCAA 1283 Query 11850 AGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--A 11907 ||||||||||||||||| | ||||| |||| ||| || ||||| ||||||||||| Sbjct 1282 TGTCTTACCCGTACCAGGGGGGCCAGCCAGAATGGCTCCTCGGGGAATCTTGGCACCGAG 1223 Query 11908 CTTC-CAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952 |||| |||| | ||| |||| ||| |||||| ||||| |||| Sbjct 1222 CTTCTCAAACT---TCTCGGGCTGCTTCAGGAAGCTCACAAACTCC 1180 >seq4896 Length=3982 Score = 95.1 bits (104), Expect = 1e-14 Identities = 198/289 (69%), Gaps = 7/289 (2%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 ||||| || || || |||||||||||||| || ||| || ||||||||||| || Sbjct 1455 TGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCAGGCATGAGGCCA 1514 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| ||| || |||||||| ||||| || Sbjct 1515 CGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCA 1574 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GAACCACTTGAGAGC 119683 || || |||| ||||||| ||| ||||| |||| |||||| || ||| || || Sbjct 1575 GCAAAGGCGACGAGACGCTGAGC-AAAGGACGAGTTCTTGTCCTGGATCCATCGGATGGC 1633 Query 119684 CCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAA-AAGTTGCTTCT 119742 ||||| |||||| || ||||||| || | ||||| | ||| | || | ||| Sbjct 1634 CCAGTCGGCCTTCTTGCGGATACAGGGGATGGTCTCAATGGCGTTGAAGAGGTAGGTTC- 1692 Query 119743 TTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTC 119791 || ||| ||||| || || | |||||||| ||||||||||| Sbjct 1693 GTTGAGCTGGCTCCTTGATGTAGGTGTCAATGAGGAGCGAGTAGGTCTC 1741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588789839410800