Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680605.1_202016-07-06] 25,286 sequences; 50,152,336 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2806 154 3e-32 seq9298 125 2e-23 seq1688 120 7e-22 seq7620 84.2 5e-11 >seq2806 Length=5600 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| ||||| ||||| || || || ||||| ||| ||||||| || || || Sbjct 1561 AACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCCTC 1502 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || || ||||| ||||| ||||| || |||||||||||||| ||||| || Sbjct 1501 GAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGATCAGGAGGAATGCCTTCCTTGTCCTG 1442 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || || || || ||||||||||| || |||||| |||||||| | ||||| Sbjct 1441 GATCTTCGATTTCACATTGTCAATGGTGTCGGACGATTCCACCTCAAGGGTGATAGTCTT 1382 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || | || || ||||| | ||||| Sbjct 1381 TCCGGTGAGGGTCTTGACGAAGATCTGCAT 1352 Score = 143 bits (158), Expect = 6e-29 Identities = 151/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||| ||||| || ||||||||||| ||||| || |||| ||||| || Sbjct 1332 ACGAGGTGGAGAGTTGACTCCTTCTGAATATTGTAGTCGGCGAGGGTTCGGCCATCCTCA 1273 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || || || || ||||| |||||||| || || || ||||| Sbjct 1272 AGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTATCTTGG 1213 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || || ||||| ||| ||||| || ||||| | ||||| Sbjct 1212 ATCTTCGACTTGACGTTGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTA 1153 Query 195112 CCTGTCAAAGTTTTTACGA 195130 || || | || || |||| Sbjct 1152 CCAGTGAGGGTCTTGACGA 1134 Score = 129 bits (142), Expect = 1e-24 Identities = 157/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| ||||| || ||||| || || || ||||| |||| || || | || ||||| Sbjct 1789 AACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCTTC 1730 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||||| || ||||||||||| || ||||| || || ||||| || ||||| || Sbjct 1729 CAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTG 1670 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| || ||| ||||| |||||||| || ||| || || || || || | || Sbjct 1669 AATCTTGGACTTCACGTTGTCAATGGTATCGCTCGA---CTCGACCTCCAGAGTGATGGT 1613 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| || | ||| || || || | ||||| Sbjct 1612 CTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 1580 >seq9298 Length=1639 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| ||| |||| ||||| || |||||||| || |||||||| Sbjct 343 TTCTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 284 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 ||||| || ||||| || || ||||| || ||||| || || || |||||| || ||| Sbjct 283 AGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 224 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 ||||||||||| || || || ||||| | ||||| || |||| || || ||||| Sbjct 223 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 165 >seq1688 Length=7796 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||| ||| || || || ||||| ||| || || | ||||| ||| Sbjct 5220 ACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 5279 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| ||||| || ||||| || || ||||| || ||||| || Sbjct 5280 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 5339 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| ||| ||||| || ||||| | ||||| Sbjct 5340 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATTGTCTTC 5399 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | ||||| Sbjct 5400 CCCGTGAGGGTCTTGACAAAGATCTGCAT 5428 >seq7620 Length=2775 Score = 84.2 bits (92), Expect = 5e-11 Identities = 182/267 (68%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 160599 TCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGGAGCCTTTTCT 160658 |||||| | ||||||| ||||||||| | || | | || || || |||| ||| | | Sbjct 1265 TCTGGATTCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGGTGACTGGACCCTCATGT 1206 Query 160659 GTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAGACTCTTTATG 160718 ||||||| || || || || | || ||||| ||||||||| ||||||| | Sbjct 1205 GTCCCAACGAGTGCCCCGGTCTGGCCGACTGCTATGGCGAGGAGTTCGAGGCTCTTTACG 1146 Query 160719 AAAGATACGAAAAAGAGGG-AAGAGCCAAAAAGGTCGTGAAGGCCCAAGAACTGTGGCAT 160777 ||| || || || | ||| ||| | | || | | |||||||||| | || ||| || Sbjct 1145 AAAAGTATGAGAAGGCGGGCAAGGGTCGCAA-GACCATGAAGGCCCAGAAGCTCTGGTAT 1087 Query 160778 CACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAAGGATGCCATC 160837 |||||| | || || |||| || | ||||| || |||||||| ||| | Sbjct 1086 GCCATCCTCGAGGCGCAGACCGAGACCGGCAACCCCTTCATGCTCTACAAGGA--CCA-C 1030 Query 160838 TGT---CGCAAGAGTAACCAGAAGAAC 160861 || |||||||| |||||||||||| Sbjct 1029 TGCAACCGCAAGAGCAACCAGAAGAAC 1003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109122153618362