Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680605.1_202016-07-06]
25,286 sequences; 50,152,336 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq7620 125 6e-24
seq2806 123 2e-23
seq1688 87.8 2e-12
>seq7620
Length=2775
Score = 125 bits (138), Expect = 6e-24
Identities = 449/697 (64%), Gaps = 9/697 (1%)
Strand=Plus/Plus
Query 139302 CTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACA 139361
||| ||||||||||| || | ||||| || || ||| ||| | ||| || | ||
Sbjct 1135 CTCATACTTTTCGTAAAGAGCCTCGAACTCCTCGCCATAGCAGTCGGCCAGACCGGGGCA 1194
Query 139362 CTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATC 139421
|| || ||||||||||| | ||| | |||||| || ||| ||| ||||||| |||||
Sbjct 1195 CTCGTTGGGACACATGAGGGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAAGAGATC 1254
Query 139422 CGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACG 139481
|||||||| | ||| | | || ||||| || || ||| || |||
Sbjct 1255 GGGAATCCAGAGAGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTT 1314
Query 139482 TTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGC 139541
|| || |||||| ||||| || || |||||||| || || || |||||||| | ||
Sbjct 1315 GCGCAGGTCAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAGGC 1374
Query 139542 GCC---TTTCCGTTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAA 139598
|| | | |||||||| || ||||||| || ||| || ||||| || || |
Sbjct 1375 ACCAGGTCGCTTGTTGCCACCCTGGTCGACGTACCGGGCAGTGTTGTTGAAGACACGAAG 1434
Query 139599 CATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCG 139658
||| || | |||| | | || |||||||| | | |||| | | || ||
Sbjct 1435 CATGGGGGTGACACCGTTGGAGGTACCGTTGGTACCAGCGATGTAAGAGCCAGTGGCACG 1494
Query 139659 GACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCA-ATCGC 139717
|| || || || | |||||| || || | | ||||| || | | || ||
Sbjct 1495 GATTCGGTGGACGTTCAGGCCGATACCACCCGCCATCTTGGAGATCATGGCACAGGTCTT 1554
Query 139718 GTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACG 139777
| | || || || ||||| |||||||| || | ||| |||||| |||||||| |
Sbjct 1555 G-AGAGTATCATAAATACCCTCAATGCTGTCCTCTTTCATGTCGACCAGGAAGCATGAGG 1613
Query 139778 AAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTT 139837
| || || || | || || || || || || || || || ||||| | ||
Sbjct 1614 ACAGCTGAGGCTGGGGAGTACCAGCATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAATT 1673
Query 139838 GTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGA 139897
||||||||| | ||| || || | | | | | ||||||| || ||| ||||
Sbjct 1674 TGCTCGACATCAGGTTGTAGGTCTCCAGGACACGCTCAATATCGTCACCCCAGATGCCGA 1733
Query 139898 CAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCA 139957
|||| || ||||| | ||| || ||| || || | | | ||| || || || |
Sbjct 1734 CAGACACACGCATGATCATGTGCTGGGGACGCTCAACAATCTTGCCATCAATCTTGAGGA 1793
Query 139958 GATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTAC 139992
| || | || ||| || |||||| |||||||||||
Sbjct 1794 GGTAGGATCG--CTCAAGAGTCTTGAAGCCAAAGTAC 1828
>seq2806
Length=5600
Score = 123 bits (136), Expect = 2e-23
Identities = 166/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || ||||| || ||||| || || || || ||| | ||
Sbjct 1352 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACTATCACCCTTGAGGTGGAATCGTCC 1411
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || ||| |||||||| ||||| ||||| || ||||| ||||||
Sbjct 1412 GACACCATTGACAATGTGAAATCGAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAA 1471
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCA--GATTATA 24881
|| || | ||||||||||| || ||||| ||||| || | | ||| || || |
Sbjct 1472 CAGCGACTCATCTTTGCCGGCAAGCAGCTCGAGGA--CGGCCGAACTCTCAGCGACTACA 1529
Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|||| || ||||| ||||| || ||| |||| | || ||||||| ||
Sbjct 1530 ACATCCAGAAGGAGTCGACTCTGCACCTGGTTCTTCGTCTGCGCGGTGG 1578
Score = 84.2 bits (92), Expect = 2e-11
Identities = 132/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778
|| || || || ||||| ||||| || ||||| || || | ||||||| | || |
Sbjct 1139 AAGACCCTCACTGGTAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACGATCGACAAC 1198
Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838
|| || ||||||||||| || || || || ||||| || || || || |||| ||
Sbjct 1199 GTCAAGTCGAAGATCCAAGATAAGGAGGGTATTCCTCCTGACCAGCAGCGCCTGATTTTC 1258
Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898
||||| || ||||| |||||| ||| | | | || || || ||||| ||||| ||
Sbjct 1259 GCCGGCAAGCAGCTTGAGGATGGCCGAACCCTCGCCGACTACAATATTCAGAAGGAGTCA 1318
Query 24899 ACACTACAC 24907
|| || |||
Sbjct 1319 ACTCTCCAC 1327
>seq1688
Length=7796
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||||||| | || || || || || || || || || ||||| || || | |
Sbjct 5429 GATGCAGATCTTTGTCAAGACCCTCACGGGGAAGACAATCACCCTCGAGGTGGAGTCTTC 5370
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|||||| | || | || || |||||||| ||||| || || || || ||||| ||
Sbjct 5369 CGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 5310
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| || | |||||||| || || ||||| |||||| | | | || || || ||
Sbjct 5309 GCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 5250
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||| || ||||| || || ||| |||| | || |||| || ||
Sbjct 5249 CATCCAGAAGGAGAGCACCCTCCACCTGGTCCTCCGCCTGCGTGGTGG 5202
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449755398616080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |