Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680605.1_202016-07-06] 25,286 sequences; 50,152,336 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq7620 125 6e-24 seq2806 123 2e-23 seq1688 87.8 2e-12 >seq7620 Length=2775 Score = 125 bits (138), Expect = 6e-24 Identities = 449/697 (64%), Gaps = 9/697 (1%) Strand=Plus/Plus Query 139302 CTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACA 139361 ||| ||||||||||| || | ||||| || || ||| ||| | ||| || | || Sbjct 1135 CTCATACTTTTCGTAAAGAGCCTCGAACTCCTCGCCATAGCAGTCGGCCAGACCGGGGCA 1194 Query 139362 CTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATC 139421 || || ||||||||||| | ||| | |||||| || ||| ||| ||||||| ||||| Sbjct 1195 CTCGTTGGGACACATGAGGGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAAGAGATC 1254 Query 139422 CGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACG 139481 |||||||| | ||| | | || ||||| || || ||| || ||| Sbjct 1255 GGGAATCCAGAGAGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTT 1314 Query 139482 TTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGC 139541 || || |||||| ||||| || || |||||||| || || || |||||||| | || Sbjct 1315 GCGCAGGTCAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAGGC 1374 Query 139542 GCC---TTTCCGTTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAA 139598 || | | |||||||| || ||||||| || ||| || ||||| || || | Sbjct 1375 ACCAGGTCGCTTGTTGCCACCCTGGTCGACGTACCGGGCAGTGTTGTTGAAGACACGAAG 1434 Query 139599 CATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCG 139658 ||| || | |||| | | || |||||||| | | |||| | | || || Sbjct 1435 CATGGGGGTGACACCGTTGGAGGTACCGTTGGTACCAGCGATGTAAGAGCCAGTGGCACG 1494 Query 139659 GACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCA-ATCGC 139717 || || || || | |||||| || || | | ||||| || | | || || Sbjct 1495 GATTCGGTGGACGTTCAGGCCGATACCACCCGCCATCTTGGAGATCATGGCACAGGTCTT 1554 Query 139718 GTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACG 139777 | | || || || ||||| |||||||| || | ||| |||||| |||||||| | Sbjct 1555 G-AGAGTATCATAAATACCCTCAATGCTGTCCTCTTTCATGTCGACCAGGAAGCATGAGG 1613 Query 139778 AAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTT 139837 | || || || | || || || || || || || || || ||||| | || Sbjct 1614 ACAGCTGAGGCTGGGGAGTACCAGCATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAATT 1673 Query 139838 GTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGA 139897 ||||||||| | ||| || || | | | | | ||||||| || ||| |||| Sbjct 1674 TGCTCGACATCAGGTTGTAGGTCTCCAGGACACGCTCAATATCGTCACCCCAGATGCCGA 1733 Query 139898 CAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCA 139957 |||| || ||||| | ||| || ||| || || | | | ||| || || || | Sbjct 1734 CAGACACACGCATGATCATGTGCTGGGGACGCTCAACAATCTTGCCATCAATCTTGAGGA 1793 Query 139958 GATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTAC 139992 | || | || ||| || |||||| ||||||||||| Sbjct 1794 GGTAGGATCG--CTCAAGAGTCTTGAAGCCAAAGTAC 1828 >seq2806 Length=5600 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || ||||| || || || || ||| | || Sbjct 1352 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACTATCACCCTTGAGGTGGAATCGTCC 1411 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| ||||| ||||| || ||||| |||||| Sbjct 1412 GACACCATTGACAATGTGAAATCGAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAA 1471 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCA--GATTATA 24881 || || | ||||||||||| || ||||| ||||| || | | ||| || || | Sbjct 1472 CAGCGACTCATCTTTGCCGGCAAGCAGCTCGAGGA--CGGCCGAACTCTCAGCGACTACA 1529 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||| || ||||| ||||| || ||| |||| | || ||||||| || Sbjct 1530 ACATCCAGAAGGAGTCGACTCTGCACCTGGTTCTTCGTCTGCGCGGTGG 1578 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || || ||||| ||||| || ||||| || || | ||||||| | || | Sbjct 1139 AAGACCCTCACTGGTAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACGATCGACAAC 1198 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || ||||||||||| || || || || ||||| || || || || |||| || Sbjct 1199 GTCAAGTCGAAGATCCAAGATAAGGAGGGTATTCCTCCTGACCAGCAGCGCCTGATTTTC 1258 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 ||||| || ||||| |||||| ||| | | | || || || ||||| ||||| || Sbjct 1259 GCCGGCAAGCAGCTTGAGGATGGCCGAACCCTCGCCGACTACAATATTCAGAAGGAGTCA 1318 Query 24899 ACACTACAC 24907 || || ||| Sbjct 1319 ACTCTCCAC 1327 >seq1688 Length=7796 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || ||||| || || | | Sbjct 5429 GATGCAGATCTTTGTCAAGACCCTCACGGGGAAGACAATCACCCTCGAGGTGGAGTCTTC 5370 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| ||||| || || || || ||||| || Sbjct 5369 CGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 5310 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | |||||||| || || ||||| |||||| | | | || || || || Sbjct 5309 GCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 5250 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || ||| |||| | || |||| || || Sbjct 5249 CATCCAGAAGGAGAGCACCCTCCACCTGGTCCTCCGCCTGCGTGGTGG 5202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449755398616080