Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680605.1_202016-07-06]
25,286 sequences; 50,152,336 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq2806 134 1e-26
seq1688 111 1e-19
seq9298 102 7e-17
seq1798 86.0 6e-12
>seq2806
Length=5600
Score = 134 bits (148), Expect = 1e-26
Identities = 147/193 (76%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||| || ||| || |||| |||||||||||||| |||||
Sbjct 1771 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAA 1712
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||||||||| | || | || |||||||||| ||||| ||||| ||
Sbjct 1711 GATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTCA-CGT 1653
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | || |||||||| || ||||||| ||||| || || || || | ||| || |
Sbjct 1652 TGTCAATGGTATCGCTCGACTCGACCTCCAGAGTGATGGTCTTTCCAGTGAGAGTCTTGA 1593
Query 35724 CAAATATCTGCAT 35736
|||| ||||||||
Sbjct 1592 CAAAGATCTGCAT 1580
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| ||| | ||||| |||| || |||||||| || |||||
Sbjct 1543 CTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 1484
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||| || || | ||||| || ||||||||| |||||| |||| | |
Sbjct 1483 GATGAGTCGCTGTTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTCGATTTCACATT 1424
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | |||||| |||||||||||| | ||||| || || || || | || || ||
Sbjct 1423 GTCAATGGTGTCGGACGATTCCACCTCAAGGGTGATAGTCTTTCCGGTGAGGGTCTTGAC 1364
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 1363 GAAGATCTGCAT 1352
Score = 100 bits (110), Expect = 3e-16
Identities = 125/169 (74%), Gaps = 2/169 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| ||||| ||||| ||||| | |||||| | || || |||||||| || || ||
Sbjct 1315 CTCCTTCTGAATATTGTAGTCGGCGAGGGTTCGGCCATCCTCAAGCTGCTTGCCGGCGAA 1256
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| ||||||||||| | ||||| | |||||| || |||||| ||| | ||
Sbjct 1255 AATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTATCTTGGATCTTCGACTTGA-CGT 1197
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712
|| | | ||||||| || |||||||| | ||||| || ||||| ||
Sbjct 1196 TGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCAGT 1148
>seq1688
Length=7796
Score = 111 bits (122), Expect = 1e-19
Identities = 145/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599
|| |||||||| || |||||||| ||| || ||| || | || || |||||||| ||
Sbjct 5232 GTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 5291
Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659
||||| || | ||||||||||| | || | || |||||||||| |||||| |||
Sbjct 5292 GCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 5351
Query 35660 AGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGT 35718
| |||| | | |||||| || |||||||| | ||||| || || ||||| | ||
Sbjct 5352 A-CGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATTGTCTTCCCCGTGAGGGT 5410
Query 35719 TTTCACAAATATCTGCAT 35736
|| ||||| ||||||||
Sbjct 5411 CTTGACAAAGATCTGCAT 5428
>seq9298
Length=1639
Score = 102 bits (112), Expect = 7e-17
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606
|||| || |||||||| |||| | |||||| | || ||||||||||| || || || |
Sbjct 345 CCTTCTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 286
Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666
||| ||||||||||||| || | || |||||||||| |||||| ||| | | |
Sbjct 285 TCAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 226
Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726
| | ||||| || || ||||| | ||||| || || ||||||| || ||||| |
Sbjct 225 CAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 166
Query 35727 A 35727
|
Sbjct 165 A 165
>seq1798
Length=8140
Score = 86.0 bits (94), Expect = 6e-12
Identities = 127/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 41171 TGTGGATGCGCTCGAGGATCAGCTGCGCGACACGATCACCCTTCATCACCACAAAGTCCA 41230
||| ||||||||||||||| ||||| |||| || || |||| | | ||| |||||||
Sbjct 199 TGTAGATGCGCTCGAGGATGAGCTGGGCGATGCGGTCGCCCTCCTTGACCTCAAAGTCGG 140
Query 41231 CGTCGTTGTTGTTCACCATCACTATGCCCACGTTGCCCGTGTAGTCGGGATCGATGACGC 41290
||||||| ||| | | | | || | ||| ||||||||| |||||||| |
Sbjct 139 ACTCGTTGTGGTTGAAGAGGAGGACCTTGACCTGGCCTCTGTAGTCGGCGTCGATGACAC 80
Query 41291 CAGCAGCAATGTCGATCTTGTGCTTCAACGCCAGCCCCGATCGGGGCGCGATCCTACCGT 41350
|||| | ||||||| |||||| | || || || |||||||| || || | ||||
Sbjct 79 CAGCGCCCGTGTCGATGAAGTGCTTGGAGGCGAGACCGGATCGGGGGGCAATGCGGCCGT 20
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450651115412880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |