Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680605.1_202016-07-06]
25,286 sequences; 50,152,336 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq4896 111 5e-19
seq7620 102 3e-16
>seq4896
Length=3982
Score = 111 bits (122), Expect = 5e-19
Identities = 355/536 (66%), Gaps = 21/536 (4%)
Strand=Plus/Minus
Query 443349 GAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGAACGACTATCTAGCCATGAA 443408
|||||||||||||| |||||||| | ||| |||||| | || || || | | ||
Sbjct 1951 GAGGAGATTGATCTATCCAAGGATCTCCACGACTGGAACAACCGCCTGACTGCCGACGAG 1892
Query 443409 CGCGATTTCTTCAAATGC---ATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGT 443465
| | |||||| | | ||| | |||||||| || | ||||| ||||||
Sbjct 1891 C---AGTTCTTCGTCTCCCACATCCTCGCCTTCTTCGCTGCCTCTGACGGCATCGTCAAC 1835
Query 443466 GAGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACACCGAGGCCCGCTACTTCTAC 443525
||||| || || ||| ||| || ||| | | |||||||||| | |||||||
Sbjct 1834 GAGAACCTTGTCGAGCGATTCAGCGGCGAGGTCCAGATCCCCGAGGCCCGATGCTTCTAC 1775
Query 443526 GCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAA-GAC 443584
| ||||| | ||||||||||| ||| ||||| |||| || | | ||| |||
Sbjct 1774 GGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTAC--TC-GCTCCTCATTGAC 1718
Query 443585 AC-TAATTCCGAACGAAGACGAACAGCGGTCCATCTTCT-CATCGTTCAT---GACCACG 443639
|| || || || || | || || || | ||| || || ||| |||||
Sbjct 1717 ACCTACATC--AAGGAGCCAGCTCAACGAACCTACCTCTTCAACGC-CATTGAGACCATC 1661
Query 443640 CCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATCTCAGC 443699
|| | ||| | ||| | |||||| | | ||| || | || || | ||| |
Sbjct 1660 CCCTGTATCCGCAAGAAGGCCGACTGGGCCATCCGATGGATCCAG-GACAAGAACTCGTC 1602
Query 443700 -TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758
|| | |||| || ||||| ||||||| ||||| || | || || ||||| |||
Sbjct 1601 CTTTGCTCAGCGTCTCGTCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTT 1542
Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818
| ||||||||||||||| | || |||||||| || |||| || ||||||||| ||||
Sbjct 1541 T-GCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTTTCCAACG 1483
Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACC 443874
| || ||| ||| ||||||||| | || |||||| || || || ||| || ||
Sbjct 1482 AGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTTGCATGCCTCCTCCACTCC 1427
>seq7620
Length=2775
Score = 102 bits (112), Expect = 3e-16
Identities = 203/294 (69%), Gaps = 20/294 (7%)
Strand=Plus/Minus
Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040
|| ||| | ||||| ||||||||| || || |||||||| || || ||| ||| ||
Sbjct 1440 CCCATGCTTCGTGTCTTCAACAACACTGCCCGGTACGTCGACCAGGGTGGCAACAAGCGA 1381
Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA---CATTGAACGGTT--TT 255095
|| || || || |||||||||| ||||| |||||||| || | |||| ||| ||
Sbjct 1380 CCTGGTGCCTTTGCCATCTACCTTGAGCCCTGGCACGCAGATGTCTTTGA---GTTCCTT 1324
Query 255096 TACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTG 255155
|| ||| | | || ||||| |||||| | |||||||||| | | | |||
Sbjct 1323 GAC--CTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCCCGCGACCTGTTCCTGGCTC 1266
Query 255156 TCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGAGAC-----CTGGAGCCT 255210
||||| |||||| || ||| | ||||| ||||| || || ||||| |||
Sbjct 1265 TCTGGATTCCCGATCTCTTCATG--AAGCGTGT--CGAGAAGA-ACGGTGACTGGACCCT 1211
Query 255211 CATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGA 255264
||||||||||||| | |||||||| | ||||| | || || ||||| ||
Sbjct 1210 CATGTGTCCCAACGAGTGCCCCGGTCTGGCCGACTGCTATGGCGAGGAGTTCGA 1157
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1587821415866270
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |