Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680605.1_202016-07-06]
25,286 sequences; 50,152,336 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq4888 158 4e-33
seq2806 141 3e-28
seq1688 87.8 5e-12
>seq4888
Length=3481
Score = 158 bits (174), Expect = 4e-33
Identities = 442/673 (66%), Gaps = 8/673 (1%)
Strand=Plus/Plus
Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321
|| || || || || || || |||||| |||| || || || | ||| | || |||||
Sbjct 507 GACATCATCGCCAACGACCAGGGTAACCGAACCACTCCCTCTTTCGTCGGTTTCACCGAC 566
Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381
|| |||||| |||| |||||| | || || || || | || || || | || ||
Sbjct 567 ACCGAGCGTCTGATCGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACC 626
Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGAT 349441
|| || || || ||||| || || ||| | | || | ||| || | ||
Sbjct 627 GTCTTCGACGCCAAGCGCCTGATCGGTCGCAAGTTCGCCGACCCTGAGGTTCAGGCCGAC 686
Query 349442 CTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTT 349501
| || || || || || | | | || | ||| |||| || || || || ||||||
Sbjct 687 ATGAAGCACTTCCCCTTCAA-GATCATCGACAAG--GGTGGCAAGCCCATCATCGAGGTT 743
Query 349502 GAATATAAAGGTGA--ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAG 349559
|| | || || || |||| | | || ||||| || || || || ||||| |
Sbjct 744 GAGTTCAAGGGCGAGAACAAGACC--TTCACCCCCGAGGAGATCTCCTCCATGGTCCTCA 801
Query 349560 TTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTA 349619
|| ||| || | || || | || | || || || || | | ||||| | |
Sbjct 802 CCAAGATGCGAGAGACCGCCGAGTCCTACCTTGGCGAGACCGTCAACAACGCTGTCGTCA 861
Query 349620 CTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTG 349679
|||| || ||||| || || || ||||||| || || || ||||| || |||||
Sbjct 862 CTGTCCCCGCCTACTTCAACGACTCCCAGCGCCAGGCCACCAAGGATGCCGGTCTCATTG 921
Query 349680 CGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGC 349739
| || | || ||||| |||| || || || ||||| ||||| || ||||| || || |
Sbjct 922 CTGGCCTCAACGTTCTCCGAATCATCAACGAGCCCACCGCTGCCGCCATTGCCTACGGTC 981
Query 349740 TTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTT 349799
| || || | || ||| || || |||| || || ||| | |||||||||||||
Sbjct 982 TCGACAAGAAGATTGAGGGCGAGCGCAACGTTCTCATCTTCGATCTTGGTGGTGGTACTT 1041
Query 349800 TTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTG 349859
| ||||| || || || || |||| ||||| || || || || || | || || ||||
Sbjct 1042 TCGATGTTTCGCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACCGCCGGTG 1101
Query 349860 ATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAAT 349919
| || || || ||||| || || || || || ||||||||| || |||||||| || |
Sbjct 1102 ACACTCACCTGGGTGGTGAGGACTTCGACAACCGTCTCGTTAACCACTTTGTTAATGAGT 1161
Query 349920 TTAAGCGTCAAGC 349932
| || || |||||
Sbjct 1162 TCAAACG-CAAGC 1173
>seq2806
Length=5600
Score = 141 bits (156), Expect = 3e-28
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
||||||||| || | | ||||| || || ||||| ||||| || || || || || ||
Sbjct 1582 CATACCACCGCGCAGACGAAGAACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTC 1523
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
| ||||| || || || || || || || |||||||| || || || ||||||||
Sbjct 1522 GCTGAGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGATCAGG 1463
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|||||| ||||| || ||||| || || | ||| ||||| ||||| | || || | |||
Sbjct 1462 AGGAATGCCTTCCTTGTCCTGGATCTTCGATTTCACATTGTCAATGGTGTCGGACGATTC 1403
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| || | ||||||||||| || || || || || ||||||||
Sbjct 1402 CACCTCAAGGGTGATAGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 1352
Score = 129 bits (142), Expect = 2e-24
Identities = 169/234 (72%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563
|||| ||| ||||| | | |||||||||||||| || ||||| || || || || ||
Sbjct 1813 TTACTGACCGCCACGGAGACGGAGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTA 1754
Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623
|| || | || || || ||||| || || || ||||||||||| || || ||||| ||
Sbjct 1753 GTCGGACAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTC 1694
Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683
||| || || || || || |||||||| || | || || || ||||| | ||| |
Sbjct 1693 AGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCAATGGTATCGCTCGA 1634
Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || || | |||||||| || || || || ||||| ||||||||
Sbjct 1633 CTCGACCTCCAGAGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 1580
Score = 111 bits (122), Expect = 5e-19
Identities = 156/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || || || ||||| ||||| || |||||||| || ||
Sbjct 1354 CATACCACCACGGAGGCGGAGGACGAGGTGGAGAGTTGACTCCTTCTGAATATTGTAGTC 1295
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
| | ||||| ||||| ||||| || || || || || || || || ||||| |||||
Sbjct 1294 GGCGAGGGTTCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGG 1235
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|||||| || || ||||| || || || | || || || || |||| || || | ||
Sbjct 1234 AGGAATACCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCGATCGTGTCGGAAGACTC 1175
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
|| || || || | ||||| || || || || || ||
Sbjct 1174 CACCTCGAGGGTGATAGTCTTACCAGTGAGGGTCTTGAC 1136
>seq1688
Length=7796
Score = 87.8 bits (96), Expect = 5e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
||||||||| | | || || || || || || ||| || || || || || ||
Sbjct 5201 ACCACCACGCAGGCGGAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 5260
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
| || || ||||| || || || || ||||||||||| || || ||||| || || ||
Sbjct 5261 CAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGG 5320
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689
|| || || || ||||| || || | || || || || || | || || | || ||
Sbjct 5321 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 5380
Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || | |||||| || || || || || ||||| ||||||||
Sbjct 5381 CTCGAGGGTGATTGTCTTCCCCGTGAGGGTCTTGACAAAGATCTGCAT 5428
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1514763492614658
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |