Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680605.1_202016-07-06]
25,286 sequences; 50,152,336 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq1296 91.5 1e-13
>seq1296
Length=8565
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/226 (70%), Gaps = 4/226 (2%)
Strand=Plus/Plus
Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695
|||||| ||||| || ||||| | |||||||| | || || |||||||||||||| ||
Sbjct 313 CTGCCAACTCTACCAGCGATCCTGCGACATGGGTCTCGGCGTCCCGTTCAACATTGCCAG 372
Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGT 34755
||||| ||||| || ||||||| || || ||| | ||||| ||| || |||
Sbjct 373 CTACGCACTGCTGACACACATGATGGCGCACGTCTGCGAATTGGTGCCT-GGCAGC-CTC 430
Query 34756 GCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAG 34813
| |||| |||| |||||||| ||||||| ||||| | || ||| | |||
Sbjct 431 ACTCACGTCATGGGCGATGCGCACGTCTACCTCGACCACGTGGATGCTCTCAACACGCAG 490
Query 34814 CTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTCGAG 34859
|| | || |||||||| || || |||| | |||| |||||
Sbjct 491 CTTGAGCGCGAGCCCCGTGACTTTCCAGAGCTGGAGATTACTCGAG 536
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/226 (70%), Gaps = 4/226 (2%)
Strand=Plus/Minus
Query 6486 CTCGAATAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCC 6545
||||| |||| | |||| || || |||||||| || | ||||| | |||
Sbjct 536 CTCGAGTAATCTCCAGCTCTGGAAAGTCACGGGGCTCGCGCTCAAGCTGCGTGTTGAGAG 477
Query 6546 GCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGG 6603
|| | ||||| ||||||| |||||||| |||| |||| | ||| || |||
Sbjct 476 CATCCACGTGGTCGAGGTAGACGTGCGCATCGCCCATGACGTGAGTGAG-GCTGCC-AGG 419
Query 6604 AACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAA 6663
||||| | ||| || || ||||||| || ||||| ||||| || |||||||||||
Sbjct 418 CACCAATTCGCAGACGTGCGCCATCATGTGTGTCAGCAGTGCGTAGCTGGCAATGTTGAA 359
Query 6664 CGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709
||| || || | |||||||| | ||||| || ||||| ||||||
Sbjct 358 CGGGACGCCGAGACCCATGTCGCAGGATCGCTGGTAGAGTTGGCAG 313
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448120715461920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |