Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680605.1_202016-07-06]
25,286 sequences; 50,152,336 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq9298 145 2e-29
seq2806 136 1e-26
seq1688 136 1e-26
>seq9298
Length=1639
Score = 145 bits (160), Expect = 2e-29
Identities = 140/180 (78%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
||||||||| || || || || || || |||||||||||||| || ||| ||||||||
Sbjct 164 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 223
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
|| || ||||| ||||| |||||||| || || ||||| ||||||||||| |||||
Sbjct 224 TGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGACT 283
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
|||||||| || || ||||| || ||||| | || ||| |||| || ||| |||| ||
Sbjct 284 GATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTTTCCGACTACAACATCCAGAA 343
>seq2806
Length=5600
Score = 136 bits (150), Expect = 1e-26
Identities = 157/210 (75%), Gaps = 6/210 (3%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980
|| || || || || |||||||| ||||| || ||||| || ||||| || |||
Sbjct 1583 CAGATCTTTGTCAAGACTCTCACTGGAAAGACCATCACTCTGGAGGTCGAGTCGAGC--- 1639
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
|| ||||| || ||||| || |||||||||||||| || || ||||| || ||||||
Sbjct 1640 GATACCATTGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAG 1699
Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100
|| ||||||||||| || || || ||||| ||||| || | || || |||| || |||
Sbjct 1700 CAGCGACTTATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGTCCGACTACAAC 1759
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTT 178130
|||| || || || || || |||||||||
Sbjct 1760 ATCCAGAAGGAGTCGACCCTTCATCTTGTT 1789
Score = 131 bits (144), Expect = 4e-25
Identities = 140/185 (76%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| || || || || ||||||||||| || ||| || |||||||| || |||||
Sbjct 873 ACGGGCAAGACCATTACCCTCGAGGTCGAGTCCTCGGATACCATCGACAATGTCAAGTCG 932
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
|||||||||||||| || || ||||| || |||||||| || || || |||||||| ||
Sbjct 933 AAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATTTTCGCCGGCAAG 992
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
||||| || ||||| | ||||| ||||||| ||| |||| || || || || || ||
Sbjct 993 CAGCTTGAGGATGGCCGCACTCTCTCCGATTACAACATCCAGAAGGAGTCGACCCTCCAC 1052
Query 178125 CTTGT 178129
|| ||
Sbjct 1053 CTCGT 1057
Score = 129 bits (142), Expect = 1e-24
Identities = 148/199 (74%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || || ||||| || || || ||||||||||||||||| || ||||| ||||
Sbjct 1134 TCGTCAAGACCCTCACTGGTAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACGATCG 1193
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| |||||||| ||||| || || || || || || ||||| |||||||| || || |
Sbjct 1194 ACAACGTCAAGTCGAAGATCCAAGATAAGGAGGGTATTCCTCCTGACCAGCAGCGCCTGA 1253
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
| |||||||| || ||||| || ||||| | || || ||||| || || | || || |
Sbjct 1254 TTTTCGCCGGCAAGCAGCTTGAGGATGGCCGAACCCTCGCCGACTACAATATTCAGAAGG 1313
Query 178111 AATCAACACTGCATCTTGT 178129
| ||||| || || || ||
Sbjct 1314 AGTCAACTCTCCACCTCGT 1332
>seq1688
Length=7796
Score = 136 bits (150), Expect = 1e-26
Identities = 143/188 (76%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || || ||||| || || || ||||||||||||||||| || |||
Sbjct 5425 CAGATCTTTGTCAAGACCCTCACGGGGAAGACAATCACCCTCGAGGTGGAGTCTTCCGAC 5366
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||| |||||||| || || ||||| || ||||||||
Sbjct 5365 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAG 5306
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||| ||||| || || || |||||||| ||||| | || || ||| || ||| ||
Sbjct 5305 CGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAACATC 5246
Query 178104 CAAAAAGA 178111
|| || ||
Sbjct 5245 CAGAAGGA 5238
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203341218927484
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |