Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680605.1_202016-07-06] 25,286 sequences; 50,152,336 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2806 147 2e-30 seq1688 140 3e-28 seq9298 116 3e-21 seq1798 82.4 7e-11 >seq2806 Length=5600 Score = 147 bits (162), Expect = 2e-30 Identities = 173/229 (76%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || ||||| || || ||||||||| ||||| |||||||| Sbjct 1806 CCGCCACGGAGACGGAGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1747 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || |||||||| || || || || || ||||| ||||| | ||| Sbjct 1746 AGGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCAGGGGGG 1687 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAG-TGTCGCTCGACTCCA 41813 | || |||||||||| ||| | || | ||||| || | || | | ||||||||||| | Sbjct 1686 ATGCCCTCCTTGTCC-TGAATCTTGGACTTCA-CGTTGTCAATGGTATCGCTCGACTCGA 1629 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || || || || || || || ||||| || || |||||||| Sbjct 1628 CCTCCAGAGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 1580 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | ||||| ||||| || ||||||||| ||||| |||||| | Sbjct 1578 CCACCGCGCAGACGAAGAACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTG 1519 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| ||||||||||||||||| || || || |||||||| || | ||| Sbjct 1518 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGATCAGGAGGA 1459 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| || | || | || || | | | |||||| ||| ||||| Sbjct 1458 ATGCCTTCCTTGTCC-TGGATCTTCGATTTCACATTGTCAATGGTGTCGGACGATTCCAC 1400 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || || || ||||| ||||| |||||||| Sbjct 1399 CTCAAGGGTGATAGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 1352 Score = 116 bits (128), Expect = 3e-21 Identities = 137/183 (75%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 |||||||||||| || ||||||| |||||| || | || || ||||||||||||||||| Sbjct 1315 CTCCTTCTGAATATTGTAGTCGGCGAGGGTTCGGCCATCCTCAAGCTGCTTGCCGGCGAA 1256 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 ||||||||||| ||||| | |||| | |||||| || ||| || ||| ||| Sbjct 1255 AATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTATCTTGGATCTTCGACTT-GACGT 1197 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | |||||| ||||||||||| | || || || ||||| || || ||||| | Sbjct 1196 TGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCAGTGAGGGTCTTGA 1137 Query 41850 CGA 41852 ||| Sbjct 1136 CGA 1134 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | || || || || || ||||||||| ||||| || ||||| Sbjct 1076 GCCACCACGAAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCGGA 1017 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | || || ||||||||||||||||| ||||||||||| ||||| | ||| Sbjct 1016 GAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGG 957 Query 41755 AACGCTCTCCTTGTCC 41770 | || |||||||||| Sbjct 956 GATGCCCTCCTTGTCC 941 >seq1688 Length=7796 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || || |||||||||||||| ||||| |||||| Sbjct 5202 CCACCACGCAGGCGGAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 5261 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||||||||| || || || || ||||| ||||| | ||| Sbjct 5262 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 5321 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || ||| ||| | | | |||||| |||||||| Sbjct 5322 ATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCGGAAGACTCCAC 5380 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || ||||| || ||||| || || |||||||| || Sbjct 5381 CTCGAGGGTGATTGTCTTCCCCGTGAGGGTCTTGACAAAGATCTGCATCTT 5431 >seq9298 Length=1639 Score = 116 bits (128), Expect = 3e-21 Identities = 137/183 (75%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| |||||||| ||||| || | || || ||||||||||| ||||| | Sbjct 345 CCTTCTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 286 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||| ||||| ||||||| ||| | || |||||||||| ||| || ||| || | Sbjct 285 TCAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTT-GACATTG 227 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | ||||| ||||| ||||| | || || || || |||||||| ||||| ||| Sbjct 226 TCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACG 167 Query 41852 AAA 41854 ||| Sbjct 166 AAA 164 >seq1798 Length=8140 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859 || || || || || ||||| |||||| ||||||| |||||| |||||| || ||| Sbjct 25 CGCATTGCCCCCCGATCCGGTCTCGCCTCCAAGCACTTCATCGACACGGGCGCTGGTGTC 84 Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCAC 85907 ||||||||||||||| | || | |||| || | |||||||||||| Sbjct 85 ATCGACGCCGACTACAGAGGCCAGGTCAAGGTCCTCCTCTTCAACCAC 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462157877263200