Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680665.1_202016-07-06] 25,997 sequences; 50,938,851 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq4116 140 7e-28 seq6118 96.9 7e-15 seq246 95.1 3e-14 >seq4116 Length=4278 Score = 140 bits (154), Expect = 7e-28 Identities = 415/632 (66%), Gaps = 21/632 (3%) Strand=Plus/Plus Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||| | | ||||| ||||| || || ||| ||| || |||||||| |||||||||||| Sbjct 2455 TACCAGTACTTTGGCTTCAAGACTCTTGAGCGATCCTACCTCCTCAAGATTGATGGCAAG 2514 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 || || || || ||||||||| | ||||| ||| ||||||| || | || |||| Sbjct 2515 ATTGTTGAGCGTCCCCAGCACATGATCATGCGTGTGTCTGTCGGCAT---CTGGGGTGAC 2571 Query 248938 -ATAGAGAGCGTG--CTCGAGACGTAC-ACCGGA--ATGAGTGAACGCTGGATGACACAT 248991 ||| ||||||| || ||||| ||| ||| || ||| || || | || ||| Sbjct 2572 GATATTGAGCGTGTCCTGGAGACCTACAACCTGATGTCGAGCAAATTCT---TCACCCAT 2628 Query 248992 GCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTT 249051 ||| | || || |||||||| || ||||| | | ||||||| ||| ||||| || Sbjct 2629 GCCTCCCCCACCCTCTTCAATGCTGGTACTCCCCAGCCTCAGCTGTCCTCATGCTTCCTG 2688 Query 249052 CTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC---GGCG 249108 | | |||| |||| ||| | || || |||||||| || || | |||| || Sbjct 2689 GTCGACATGAAAGAGGACAGCATTGAGGGTATTTATGATACTCTCA---AGACCTGTGCC 2745 Query 249109 AAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGT 249168 | ||| || || | ||||| || ||||| || |||| | ||||| || | || Sbjct 2746 ATGATCTCCAAGATGGCGGGTGGTATCGGCCTGAACGTCCACCGAATCCGTGCCACTGGC 2805 Query 249169 TCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTT 249228 || |||||| ||||| || || | | ||| || ||| | ||||| ||| Sbjct 2806 TCTTACATCGCTGGTACCAACGGTACCTCCAACGGTGTCACCCCCATGCTTCGTGTCTTC 2865 Query 249229 GAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATG 249285 | ||| ||| ||| | || |||||| || | ||| || | || ||||| Sbjct 2866 AACAACACTGCCCGGTACGTCGACCAGGGTGGCAACAAGCGACCTGGTGCCTTTGCCATC 2925 Query 249286 TATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGC 249345 || | || |||||||| ||| | || |||||||| ||| || |||||| ||||| Sbjct 2926 TACCTTGAGCCCTGGCACGCAGATGTCTTTGAGTTCCTTGACCTGCGCAAGAACCACGGC 2985 Query 249346 AACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405 || ||| | | || || ||||| ||| | || ||| | |||| | |||||| Sbjct 2986 AAGGAGGAGGTCCGCGCCCGCGACCTGTTCCTGGCTCTCTGGATTCCCGATCTCTTCATG 3045 Query 249406 CGCCGCGTCAAGGCCGACGGCGATTGGACGCT 249437 || ||| || |||| || ||||| || Sbjct 3046 AAGCGTGTCGAGAAGAACGGTGACTGGACCCT 3077 >seq6118 Length=3185 Score = 96.9 bits (106), Expect = 7e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 254000 CCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGC 254059 ||| || ||| | || || |||| ||||| || || ||||||||||| |||||||| || Sbjct 2229 CCTCCCCCATCTCCTCCTCTACGGCCCTCCAGGCACCGGCAAGACGTCGACCATCCTCGC 2288 Query 254060 GCTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGC 254119 || ||||| | | | ||| | |||||| | || ||||||||||| ||||| Sbjct 2289 CCTCGCCCGCCGCATCTATGGCACCGCAAACATGCGCCAGATGGTGCTCGAGCTCAACGC 2348 Query 254120 TTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTT 254167 || ||||| ||||| | ||||| || || || |||||||||| || Sbjct 2349 CTCGGACGACCGCGGCATCGACGTGGTGCGGGAGCAGATCAAGACGTT 2396 >seq246 Length=14712 Score = 95.1 bits (104), Expect = 3e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 254202 TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAG 254261 || || ||||||||| || | || || |||||||| ||| ||||||| || || ||| Sbjct 9755 TGCCCCCCTTTCAAGATCATCATTCTCGACGAGGCCGACTCCATGACACAAGATGCCCAG 9696 Query 254262 TCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGC 254321 ||| || || |||| |||||||| || | | || || || ||| || | ||| Sbjct 9695 AGCGCACTGCGAAGAACAATGGAGACATACAGCAAGATCACTCGCTTCTGCTTGATCTGC 9636 Query 254322 AACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCAGC 254381 ||||| || | ||||||| |||||| ||| ||| ||| |||||||||||||| Sbjct 9635 AACTATGTCACCCGAATCATCGACCCGCTCGCTAGTCGATGCAGCAAGTTTCGATTCAAG 9576 Query 254382 ACCCTCG 254388 | ||||| Sbjct 9575 AGCCTCG 9569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073408742840896