Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680665.1_202016-07-06] 25,997 sequences; 50,938,851 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4116 316 2e-81 seq2597 185 8e-42 seq4644 116 3e-21 seq7763 93.3 4e-14 seq6050 89.7 5e-13 >seq4116 Length=4278 Score = 316 bits (350), Expect = 2e-81 Identities = 643/951 (68%), Gaps = 8/951 (1%) Strand=Plus/Minus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 || ||||| ||||| || || ||||| || || |||||| | ||| ||||| || Sbjct 3371 GAAGCAAGGTTGCAGACAGCAACCTCATCAGGGGCGCAGTACTCGATAATCTCGGTGCAG 3312 Query 23087 AGATTG---CTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAA 23143 |||||| |||| || ||||||| || |||||||||| || || ||||| Sbjct 3311 AGATTGGAGCTACGG---ATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGG 3255 Query 23144 TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCAC 23203 ||||||||||||||| | || |||| |||||| ||||| ||||| ||| || ||| Sbjct 3254 TCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGCGCCTCGAGGATGGCATACCAG 3195 Query 23204 ATAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAA 23262 | |||| || | | ||| || ||| ||| | | ||| ||||||| ||| | Sbjct 3194 AGCTTCTGGGCCTTCATG-GTCTTGCGACCCTTGCCCGCCTTCTCATACTTTTCGTAAAG 3136 Query 23263 CGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAG 23322 || || || || | || || ||||||||||| ||||| | | | ||||||||||| Sbjct 3135 AGCCTCGAACTCCTCGCCATAGCAGTCGGCCAGACCGGGGCACTCGTTGGGACACATGAG 3076 Query 23323 ACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTA 23382 |||| || || || || || |||| || ||||| || ||||| ||||| Sbjct 3075 GGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCCAG 3016 Query 23383 GAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTC 23442 |||||| ||||||||||| |||||||| |||||| |||||| || || | || || Sbjct 3015 GAACAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTC 2956 Query 23443 CAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCC 23502 || || || || ||||| ||||| ||||| | |||||| || || |||| ||| ||||| Sbjct 2955 AAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAGGCACCAGGTCGCTTGTTGCC 2896 Query 23503 GCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTT 23562 ||||| |||||||| ||||| ||||||||| | || | ||||| || || |||||| Sbjct 2895 ACCCTGGTCGACGTACCGGGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACACCGTT 2836 Query 23563 GGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAA 23622 ||| | ||| || || | || || | || || | ||| |||| | Sbjct 2835 GGAGGTACCGTTGGTACCAGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGACGTTCAG 2776 Query 23623 ACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCC 23682 || || || || || || || ||||| || || || ||||| || || || || Sbjct 2775 GCCGATACCACCCGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCATAAATACC 2716 Query 23683 CTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGT 23742 ||| |||||||||||||| | |||||| ||| || || |||| || | | ||| || Sbjct 2715 CTCAATGCTGTCCTCTTTCATGTCGACCAGGAAGCATGAGGACAGCTGAGGCTGGGGAGT 2656 Query 23743 AGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTA 23802 | | || ||| || || ||| ||| || || ||| || ||||||| || ||||| Sbjct 2655 ACCAGCATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAATTTGCTCGACATCAGGTTGTA 2596 Query 23803 CGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCAT 23862 || || | | | ||||| || || || || |||| | || ||||| ||||| Sbjct 2595 GGTCTCCAGGACACGCTCAATATCGTCACCCCAGATGCCGACAGACACACGCATGATCAT 2536 Query 23863 GTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGT 23922 || || || | ||| || | ||| | ||| |||| || || || || | | || Sbjct 2535 GTGCTGGGGACGCTCAACAATCTTGCCATCAATCTTGAGGAGGTAGGATCGCTCAAGAGT 2476 Query 23923 TTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || || ||||| || | || | |||||||| || | || |||||||| Sbjct 2475 CTTGAAGCCAAAGTACTGGTATTGGAAGTCACGGTCATAGACAATGGCCGA 2425 Score = 127 bits (140), Expect = 2e-24 Identities = 344/524 (66%), Gaps = 7/524 (1%) Strand=Plus/Minus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 || || || || ||||||||||||||||| || | |||||| || ||| || || Sbjct 4253 GTTCGCAGGTAGTACATGCCCGTCTTCAGGCCGAGCTTCCAGCCGGCAAAGTGCATGCTG 4194 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | || || | || | ||||| | |||| ||||| |||||| || Sbjct 4193 GTGATCTTGCCCATGGTGGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGATCAATG 4134 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTC 22324 || || ||||| ||||| ||||| | | | ||| ||| || ||||| |||||| Sbjct 4133 AAGGCACCTCGGTCGGCAGCCATCTGAACGACCTGGCGCTGCGAAATCTCCCAGACGGTC 4074 Query 22325 TTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTG 22384 ||||| || | ||| ||| || || ||| |||||| ||| ||||| | | Sbjct 4073 TTGTAGAGGGCCTTGACCTCGGCGGGGATGTTGGGGATGTTCTGGATGGAACCGTTCTCG 4014 Query 22385 TGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACC 22444 ||||| ||||| || | ||| ||||| || ||| | | || |||| | Sbjct 4013 GCAATGATTCGGTTTTTCATGGCATCCGACCACAGGCCCATGTCAACAAGGTCCTTGAGC 3954 Query 22445 AGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGAT 22504 || |||| || || || |||||||| | | ||| ||||| ||||| |||||||| Sbjct 3953 AGCCAGGGGTTGACGACCTGGAACTCGCCAGCGAGGACACGGCGCTGGTAGATGTTGGAG 3894 Query 22505 GTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATC 22564 ||| | || ||||| | || ||||| ||||| ||||| | || || || ||||| Sbjct 3893 GTGTAAGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGCGAAGTACTGGCAGTAGGCATA 3834 Query 22565 GGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATCG 22622 || || | ||| || ||| | | |||||||| |||| | | | |||| || Sbjct 3833 GGGGCAAGCAGCAGACTGTTGCGAATGCCGTGCTCCTTGACCTGCT--CCCTGAGGTTCT 3776 Query 22623 ACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCG 22666 ||||||||| || || || ||| ||||||| |||||| ||| Sbjct 3775 CCCAGTCCCAGAGGTCAGAAGGCTTCACATT---CCACATGTCG 3735 >seq2597 Length=5433 Score = 185 bits (204), Expect = 8e-42 Identities = 557/847 (66%), Gaps = 31/847 (4%) Strand=Plus/Plus Query 57564 CCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTA 57623 ||| | || ||| | |||||||| ||||| || || || || ||||| | ||| || | Sbjct 3368 CCACAGATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATT 3427 Query 57624 GACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAAT-CTGA-GAGAAATTTTA 57681 || || || |||||||| ||| ||| | || | || | | || ||| | || | Sbjct 3428 GATCTATCCAAGGATCTCCACGACTGGAACAACCGCCT-GACTGCCGACGAGCAGTTCTT 3486 Query 57682 --TTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739 | ||| | | || || ||||| || || || || || || |||||||| | || Sbjct 3487 CGTCTCCCACATCCTCGCCTTCTTCGCTGCCTCTGACGGCATCGTCAACGAGAACCTTGT 3546 Query 57740 CGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGT 57799 ||| |||| || || || | | ||||| ||||||| ||||| || || | Sbjct 3547 CGAGCGATTCAGCGGCGAGGTCCAGATCCCCGAGGCCCGATGCTTCTACGGCTTCCAGAT 3606 Query 57800 GGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 || || ||| | || || || | || ||||| ||||| || || ||| | ||||| Sbjct 3607 CATGATGGAGAACATCCACTCCGAGACCTACTCGCTCCTCATTGACACCTACATCAAGGA 3666 Query 57860 -CAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGA 57918 | | | | ||| || || |||||||| || || || || ||| ||| ||||| Sbjct 3667 GCCAGCTCAACGAACCTAC-CTCTTCAACGCCATTGAGACCATCCCCTGTATCCGCAAGA 3725 Query 57919 AGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTC---GCCGAGAGGC 57975 |||| || ||| | ||| |||||| | | || | | ||| | || || | | Sbjct 3726 AGGCCGACTGGGCCATCCGATGGATCCAG---GACAAGAACTCGTCCTTTGCTCAGCGTC 3782 Query 57976 TAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTT 58035 | |||| || || |||||||| ||||| ||||| || |||||| | || || | Sbjct 3783 TCGTCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCT 3842 Query 58036 GGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCG 58095 || | ||||| || ||||| ||||| |||||||| ||| ||||||| | || || || | Sbjct 3843 GGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTG 3902 Query 58096 ACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCG- 58154 |||||||||| || || || ||||| ||||| | |||| ||| |||| ||| Sbjct 3903 ACGAGGGTCTTCACACCGACTTTGCATGCCTCCTCCACTCCCAC---CTCAA-GGGCCGT 3958 Query 58155 ------ACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAG 58208 | || || |||| |||||| |||||||| || ||| | || || | ||| Sbjct 3959 GCCAGCAAGCAGG---TCATCCAGGACATCATCACCGATGCCGTCACCATTGAGCAGGAG 4015 Query 58209 TTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAG 58268 || | ||||| ||||| || ||| ||||||| |||||| || | ||| || Sbjct 4016 TTCCTGACCGAGGCCCTCCCCTGCGCCCTGCTCGGCATGAACGCCGACCTCATGAAGCAG 4075 Query 58269 TACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACA 58326 ||||| ||||| || |||||| | || | ||| || | |||| ||| |||| Sbjct 4076 TACATCGAGTTCGTCGCCGACCGCCTCCTCGTCGCCCTCGGCAACGAGAAGGTC--TACA 4133 Query 58327 ACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTT 58386 | | | || || || || || ||| | ||||| |||| |||||||| ||||| | Sbjct 4134 AGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTTCT 4193 Query 58387 TCGAAAA 58393 |||| || Sbjct 4194 TCGAGAA 4200 >seq4644 Length=3541 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || || || |||||| | || || ||| ||||| Sbjct 2524 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACTATCACCCTTGAGGTGGAATCGTCC 2465 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| || || ||||||||||||| | || || || || Sbjct 2464 GACACCATTGACAATGTGAAATCGAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAA 2405 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || || ||||| ||| | || ||| ||| | ||||| || ||| Sbjct 2404 CAGCGACTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTCAGCGACTACAAC 2345 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || |||||||| || ||||| ||| | ||| | || |||| Sbjct 2344 ATCCAGAAGGAGTCGACTCTGCACCTGGTTCTTCGTCTGCGCGGTGGTA 2296 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || || || || ||||| | || || || || | Sbjct 2296 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACCATCACTCTGGAGGTCGAGTCGAGC 2237 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || | || ||||||||| ||| | || || |||||| Sbjct 2236 GATACCATTGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAG 2177 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || ||||| || ||| |||||||| | || || ||| || ||| Sbjct 2176 CAGCGACTTATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGTCCGACTACAAC 2117 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || || ||||| |||||||| || || | || | |||||| Sbjct 2116 ATCCAGAAGGAGTCGACCCTTCATCTTGTTCTCCGTCTCCGTGGCGGT 2069 >seq7763 Length=1926 Score = 93.3 bits (102), Expect = 4e-14 Identities = 166/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || || ||||| || || || || || |||||| |||| || || | Sbjct 1234 AAGATGCAGATCTTTGTCAAGACCCTCACGGGGAAGACAATCACCCTCGAGGTGGAGTCT 1175 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | || ||||||||| ||| | || |||||| Sbjct 1174 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 1115 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || || |||||||| ||| | || || || ||||||| || Sbjct 1114 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 1055 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAG 31425 ||||| || || || || || || ||||| || | ||| | || ||| ||||| Sbjct 1054 AACATCCAGAAGGAGAGCACCCTCCACCTGGTCCTCCGCCTGCGTGGTGGTGCCAAGAAG 995 Query 31426 CG 31427 || Sbjct 994 CG 993 >seq6050 Length=2754 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 31201 TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGT 31260 |||||| ||||| ||||| ||||| || |||||| |||| || || | || |||| | Sbjct 2605 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 2546 Query 31261 CGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCT 31320 || | ||||| | || ||||||||| ||| | || || ||||||||||| || Sbjct 2545 TGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGACT 2486 Query 31321 AATATTCGCTGGCAAACAGTTGGAAGA 31347 || ||||||||||| ||| |||| || Sbjct 2485 GATCTTCGCTGGCAAGCAGCTGGAGGA 2459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445621542636240