Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680665.1_202016-07-06]
25,997 sequences; 50,938,851 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq4116 316 2e-81
seq2597 185 8e-42
seq4644 116 3e-21
seq7763 93.3 4e-14
seq6050 89.7 5e-13
>seq4116
Length=4278
Score = 316 bits (350), Expect = 2e-81
Identities = 643/951 (68%), Gaps = 8/951 (1%)
Strand=Plus/Minus
Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086
|| ||||| ||||| || || ||||| || || |||||| | ||| ||||| ||
Sbjct 3371 GAAGCAAGGTTGCAGACAGCAACCTCATCAGGGGCGCAGTACTCGATAATCTCGGTGCAG 3312
Query 23087 AGATTG---CTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAA 23143
|||||| |||| || ||||||| || |||||||||| || || |||||
Sbjct 3311 AGATTGGAGCTACGG---ATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGG 3255
Query 23144 TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCAC 23203
||||||||||||||| | || |||| |||||| ||||| ||||| ||| || |||
Sbjct 3254 TCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGCGCCTCGAGGATGGCATACCAG 3195
Query 23204 ATAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAA 23262
| |||| || | | ||| || ||| ||| | | ||| ||||||| ||| |
Sbjct 3194 AGCTTCTGGGCCTTCATG-GTCTTGCGACCCTTGCCCGCCTTCTCATACTTTTCGTAAAG 3136
Query 23263 CGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAG 23322
|| || || || | || || ||||||||||| ||||| | | | |||||||||||
Sbjct 3135 AGCCTCGAACTCCTCGCCATAGCAGTCGGCCAGACCGGGGCACTCGTTGGGACACATGAG 3076
Query 23323 ACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTA 23382
|||| || || || || || |||| || ||||| || ||||| |||||
Sbjct 3075 GGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCCAG 3016
Query 23383 GAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTC 23442
|||||| ||||||||||| |||||||| |||||| |||||| || || | || ||
Sbjct 3015 GAACAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTC 2956
Query 23443 CAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCC 23502
|| || || || ||||| ||||| ||||| | |||||| || || |||| ||| |||||
Sbjct 2955 AAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAGGCACCAGGTCGCTTGTTGCC 2896
Query 23503 GCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTT 23562
||||| |||||||| ||||| ||||||||| | || | ||||| || || ||||||
Sbjct 2895 ACCCTGGTCGACGTACCGGGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACACCGTT 2836
Query 23563 GGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAA 23622
||| | ||| || || | || || | || || | ||| |||| |
Sbjct 2835 GGAGGTACCGTTGGTACCAGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGACGTTCAG 2776
Query 23623 ACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCC 23682
|| || || || || || || ||||| || || || ||||| || || || ||
Sbjct 2775 GCCGATACCACCCGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCATAAATACC 2716
Query 23683 CTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGT 23742
||| |||||||||||||| | |||||| ||| || || |||| || | | ||| ||
Sbjct 2715 CTCAATGCTGTCCTCTTTCATGTCGACCAGGAAGCATGAGGACAGCTGAGGCTGGGGAGT 2656
Query 23743 AGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTA 23802
| | || ||| || || ||| ||| || || ||| || ||||||| || |||||
Sbjct 2655 ACCAGCATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAATTTGCTCGACATCAGGTTGTA 2596
Query 23803 CGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCAT 23862
|| || | | | ||||| || || || || |||| | || ||||| |||||
Sbjct 2595 GGTCTCCAGGACACGCTCAATATCGTCACCCCAGATGCCGACAGACACACGCATGATCAT 2536
Query 23863 GTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGT 23922
|| || || | ||| || | ||| | ||| |||| || || || || | | ||
Sbjct 2535 GTGCTGGGGACGCTCAACAATCTTGCCATCAATCTTGAGGAGGTAGGATCGCTCAAGAGT 2476
Query 23923 TTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973
|| || ||||| || | || | |||||||| || | || ||||||||
Sbjct 2475 CTTGAAGCCAAAGTACTGGTATTGGAAGTCACGGTCATAGACAATGGCCGA 2425
Score = 127 bits (140), Expect = 2e-24
Identities = 344/524 (66%), Gaps = 7/524 (1%)
Strand=Plus/Minus
Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204
|| || || || ||||||||||||||||| || | |||||| || ||| || ||
Sbjct 4253 GTTCGCAGGTAGTACATGCCCGTCTTCAGGCCGAGCTTCCAGCCGGCAAAGTGCATGCTG 4194
Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264
|| | || || | || | ||||| | |||| ||||| |||||| ||
Sbjct 4193 GTGATCTTGCCCATGGTGGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGATCAATG 4134
Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTC 22324
|| || ||||| ||||| ||||| | | | ||| ||| || ||||| ||||||
Sbjct 4133 AAGGCACCTCGGTCGGCAGCCATCTGAACGACCTGGCGCTGCGAAATCTCCCAGACGGTC 4074
Query 22325 TTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTG 22384
||||| || | ||| ||| || || ||| |||||| ||| ||||| | |
Sbjct 4073 TTGTAGAGGGCCTTGACCTCGGCGGGGATGTTGGGGATGTTCTGGATGGAACCGTTCTCG 4014
Query 22385 TGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACC 22444
||||| ||||| || | ||| ||||| || ||| | | || |||| |
Sbjct 4013 GCAATGATTCGGTTTTTCATGGCATCCGACCACAGGCCCATGTCAACAAGGTCCTTGAGC 3954
Query 22445 AGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGAT 22504
|| |||| || || || |||||||| | | ||| ||||| ||||| ||||||||
Sbjct 3953 AGCCAGGGGTTGACGACCTGGAACTCGCCAGCGAGGACACGGCGCTGGTAGATGTTGGAG 3894
Query 22505 GTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATC 22564
||| | || ||||| | || ||||| ||||| ||||| | || || || |||||
Sbjct 3893 GTGTAAGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGCGAAGTACTGGCAGTAGGCATA 3834
Query 22565 GGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATCG 22622
|| || | ||| || ||| | | |||||||| |||| | | | |||| ||
Sbjct 3833 GGGGCAAGCAGCAGACTGTTGCGAATGCCGTGCTCCTTGACCTGCT--CCCTGAGGTTCT 3776
Query 22623 ACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCG 22666
||||||||| || || || ||| ||||||| |||||| |||
Sbjct 3775 CCCAGTCCCAGAGGTCAGAAGGCTTCACATT---CCACATGTCG 3735
>seq2597
Length=5433
Score = 185 bits (204), Expect = 8e-42
Identities = 557/847 (66%), Gaps = 31/847 (4%)
Strand=Plus/Plus
Query 57564 CCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTA 57623
||| | || ||| | |||||||| ||||| || || || || ||||| | ||| || |
Sbjct 3368 CCACAGATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATT 3427
Query 57624 GACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAAT-CTGA-GAGAAATTTTA 57681
|| || || |||||||| ||| ||| | || | || | | || ||| | || |
Sbjct 3428 GATCTATCCAAGGATCTCCACGACTGGAACAACCGCCT-GACTGCCGACGAGCAGTTCTT 3486
Query 57682 --TTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739
| ||| | | || || ||||| || || || || || || |||||||| | ||
Sbjct 3487 CGTCTCCCACATCCTCGCCTTCTTCGCTGCCTCTGACGGCATCGTCAACGAGAACCTTGT 3546
Query 57740 CGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGT 57799
||| |||| || || || | | ||||| ||||||| ||||| || || |
Sbjct 3547 CGAGCGATTCAGCGGCGAGGTCCAGATCCCCGAGGCCCGATGCTTCTACGGCTTCCAGAT 3606
Query 57800 GGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859
|| || ||| | || || || | || ||||| ||||| || || ||| | |||||
Sbjct 3607 CATGATGGAGAACATCCACTCCGAGACCTACTCGCTCCTCATTGACACCTACATCAAGGA 3666
Query 57860 -CAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGA 57918
| | | | ||| || || |||||||| || || || || ||| ||| |||||
Sbjct 3667 GCCAGCTCAACGAACCTAC-CTCTTCAACGCCATTGAGACCATCCCCTGTATCCGCAAGA 3725
Query 57919 AGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTC---GCCGAGAGGC 57975
|||| || ||| | ||| |||||| | | || | | ||| | || || | |
Sbjct 3726 AGGCCGACTGGGCCATCCGATGGATCCAG---GACAAGAACTCGTCCTTTGCTCAGCGTC 3782
Query 57976 TAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTT 58035
| |||| || || |||||||| ||||| ||||| || |||||| | || || |
Sbjct 3783 TCGTCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCT 3842
Query 58036 GGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCG 58095
|| | ||||| || ||||| ||||| |||||||| ||| ||||||| | || || || |
Sbjct 3843 GGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTG 3902
Query 58096 ACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCG- 58154
|||||||||| || || || ||||| ||||| | |||| ||| |||| |||
Sbjct 3903 ACGAGGGTCTTCACACCGACTTTGCATGCCTCCTCCACTCCCAC---CTCAA-GGGCCGT 3958
Query 58155 ------ACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAG 58208
| || || |||| |||||| |||||||| || ||| | || || | |||
Sbjct 3959 GCCAGCAAGCAGG---TCATCCAGGACATCATCACCGATGCCGTCACCATTGAGCAGGAG 4015
Query 58209 TTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAG 58268
|| | ||||| ||||| || ||| ||||||| |||||| || | ||| ||
Sbjct 4016 TTCCTGACCGAGGCCCTCCCCTGCGCCCTGCTCGGCATGAACGCCGACCTCATGAAGCAG 4075
Query 58269 TACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACA 58326
||||| ||||| || |||||| | || | ||| || | |||| ||| ||||
Sbjct 4076 TACATCGAGTTCGTCGCCGACCGCCTCCTCGTCGCCCTCGGCAACGAGAAGGTC--TACA 4133
Query 58327 ACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTT 58386
| | | || || || || || ||| | ||||| |||| |||||||| ||||| |
Sbjct 4134 AGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTTCT 4193
Query 58387 TCGAAAA 58393
|||| ||
Sbjct 4194 TCGAGAA 4200
>seq4644
Length=3541
Score = 116 bits (128), Expect = 3e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| || || || || || |||||| | || || ||| |||||
Sbjct 2524 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACTATCACCCTTGAGGTGGAATCGTCC 2465
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | || ||| || || ||||||||||||| | || || || ||
Sbjct 2464 GACACCATTGACAATGTGAAATCGAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAA 2405
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| || || || || ||||| ||| | || ||| ||| | ||||| || |||
Sbjct 2404 CAGCGACTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTCAGCGACTACAAC 2345
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| || || || |||||||| || ||||| ||| | ||| | || ||||
Sbjct 2344 ATCCAGAAGGAGTCGACTCTGCACCTGGTTCTTCGTCTGCGCGGTGGTA 2296
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || |||||||| || || || || ||||| | || || || || |
Sbjct 2296 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACCATCACTCTGGAGGTCGAGTCGAGC 2237
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | || || | || ||||||||| ||| | || || ||||||
Sbjct 2236 GATACCATTGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAG 2177
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| || || || ||||| || ||| |||||||| | || || ||| || |||
Sbjct 2176 CAGCGACTTATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGTCCGACTACAAC 2117
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
|| || || || ||||| |||||||| || || | || | ||||||
Sbjct 2116 ATCCAGAAGGAGTCGACCCTTCATCTTGTTCTCCGTCTCCGTGGCGGT 2069
>seq7763
Length=1926
Score = 93.3 bits (102), Expect = 4e-14
Identities = 166/242 (69%), Gaps = 4/242 (2%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| || || || ||||| || || || || || |||||| |||| || || |
Sbjct 1234 AAGATGCAGATCTTTGTCAAGACCCTCACGGGGAAGACAATCACCCTCGAGGTGGAGTCT 1175
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
||||||| |||| | ||||| | || ||||||||| ||| | || ||||||
Sbjct 1174 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 1115
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
|||||||| || || || |||||||| ||| | || || || ||||||| ||
Sbjct 1114 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 1055
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAG 31425
||||| || || || || || || ||||| || | ||| | || ||| |||||
Sbjct 1054 AACATCCAGAAGGAGAGCACCCTCCACCTGGTCCTCCGCCTGCGTGGTGGTGCCAAGAAG 995
Query 31426 CG 31427
||
Sbjct 994 CG 993
>seq6050
Length=2754
Score = 89.7 bits (98), Expect = 5e-13
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 31201 TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGT 31260
|||||| ||||| ||||| ||||| || |||||| |||| || || | || |||| |
Sbjct 2605 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 2546
Query 31261 CGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCT 31320
|| | ||||| | || ||||||||| ||| | || || ||||||||||| ||
Sbjct 2545 TGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGACT 2486
Query 31321 AATATTCGCTGGCAAACAGTTGGAAGA 31347
|| ||||||||||| ||| |||| ||
Sbjct 2485 GATCTTCGCTGGCAAGCAGCTGGAGGA 2459
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445621542636240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |