Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680665.1_202016-07-06]
25,997 sequences; 50,938,851 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq4644 140 8e-28
seq2597 113 1e-19
seq6050 84.2 5e-11
seq1454 84.2 5e-11
>seq4644
Length=3541
Score = 140 bits (154), Expect = 8e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|||||||| || | ||| || || || | || || || ||||| || |||||| |
Sbjct 2298 CCACCGCGCAGACGAAGAACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTG 2357
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || ||||| || | || || || || ||||| || ||||||||| | ||
Sbjct 2358 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGATCAGGAGGA 2417
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| ||||| || |||||||| |||| |||||| || || || | ||| |||||| ||
Sbjct 2418 ATGCCTTCCTTGTCCTGGATCTTCGATTTCACATTGTCAATGGTGTCGGACGATTCCACC 2477
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || ||||| ||||| ||||| || ||||||||||| ||||||||
Sbjct 2478 TCAAGGGTGATAGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 2524
Score = 136 bits (150), Expect = 9e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| || || ||||| | || || ||||||| || || || ||||| || ||||||
Sbjct 2067 TGACCGCCACGGAGACGGAGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCG 2126
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| || ||||| |||||||| | || || || || ||||| || ||||| || |
Sbjct 2127 GACAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCAGGG 2186
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||||| || || || ||||| || || | |||||||| || || | ||||||||| ||
Sbjct 2187 GGGATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCAATGGTATCGCTCGACTCG 2246
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || ||||| ||||| || || ||||||||||| || ||||||||
Sbjct 2247 ACCTCCAGAGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 2296
Score = 107 bits (118), Expect = 5e-18
Identities = 154/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || ||||| || | || || || || ||||| |||||||||
Sbjct 2526 CCACCACGGAGGCGGAGGACGAGGTGGAGAGTTGACTCCTTCTGAATATTGTAGTCGGCG 2585
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || || || | || || || ||||| ||||| ||||| || | ||
Sbjct 2586 AGGGTTCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGGAGGA 2645
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || ||||| ||||| |||| || ||||| || || | ||| || || ||
Sbjct 2646 ATACCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCGATCGTGTCGGAAGACTCCACC 2705
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463
||||| ||||| ||||| || || || ||||||||||
Sbjct 2706 TCGAGGGTGATAGTCTTACCAGTGAGGGTCTTGACGA 2742
>seq2597
Length=5433
Score = 113 bits (124), Expect = 1e-19
Identities = 130/175 (74%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 269150 TGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCT 269209
|| |||| ||||| ||||| |||||||| || || ||||| ||||| || || || ||
Sbjct 4044 TGCTCGGCATGAACGCCGACCTCATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTCC 4103
Query 269210 TCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAAC 269269
|| || ||||| | ||||| || ||||| | | || ||||||| ||| |||||
Sbjct 4104 TCGTCGCCCTCGGCAACGAGAAGGTCTACAAGGCCACCAACCCCTTCGACTTCATGGAGA 4163
Query 269270 TAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA 269324
|| || |||| || ||||| ||||||||||| ||||||||| | ||||| ||
Sbjct 4164 ACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCA 4218
>seq6050
Length=2754
Score = 84.2 bits (92), Expect = 5e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|| ||||| || ||||||| || || || || || || | || || || |||||||||
Sbjct 2426 TTCTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 2485
Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405
|| ||||| || ||||| || || || |||||||| || | || || || ||
Sbjct 2486 AGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 2545
Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464
|| | || || || || ||||| ||||| ||||| || ||||| ||||| |||||
Sbjct 2546 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 2604
>seq1454
Length=6865
Score = 84.2 bits (92), Expect = 5e-11
Identities = 196/288 (68%), Gaps = 6/288 (2%)
Strand=Plus/Plus
Query 325964 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAAT-TTCTAGAAGATTAGGGAAACA 326022
||||| || |||||||||| | |||||| | |||| ||| ||| || |||||
Sbjct 3063 ACGATGGGAGTGATGAACTCTTGCAAGAAGTCCGGAACCTTCAAGA-GAGACGGGAACTG 3121
Query 326023 GCTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGT 326082
| || | ||||| || | |||||| || ||| |||| || |||| || ||
Sbjct 3122 GACTTGAAGGAAGTTGATCAGGAGACCCTTGATATGACTTCCATCGTGATCCTGATCAGT 3181
Query 326083 CATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCGGTTTG 326142
||||||||||| ||| ||||| ||||| |||||| ||||||| | | |
Sbjct 3182 CATGATCATCAGATGGCCGTATCGAAGACTCTTGGTGTCTGTGTACACCTGCTTGTGCTT 3241
Query 326143 AAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTTCTTCGTGATGCTTG-CCACG 326200
|| || || | || |||| | ||| |||||| | |||||| ||||| || | | |||
Sbjct 3242 CAGACCCAGGAACTGCTTGATGTTCTG-GATTTCCTGGTTCTTGGTGAT-CTGGTCGACG 3299
Query 326201 GATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCA 326248
|||||||||||||| | | || ||||| || ||||| || |||
Sbjct 3300 CTGGCATCGCGGACGTTGAGCATCTTACCACGGAGTGGGAAGACACCA 3347
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179261472970966
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |