Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680665.1_202016-07-06] 25,997 sequences; 50,938,851 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4116 206 3e-48 >seq4116 Length=4278 Score = 206 bits (228), Expect = 3e-48 Identities = 922/1437 (64%), Gaps = 39/1437 (3%) Strand=Plus/Minus Query 105895 GTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGG 105954 |||||| | | ||||| || |||||| | | | | |||||||| | ||||| || Sbjct 3945 GTTGACGACCTGGAACTCGCCAGCGAGGACACGGCGCTGGTAGATGTTGGAGGTGTAAGG 3886 Query 105955 TTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCAT 106014 || ||||| || || || |||| ||| || | || ||| || ||||| || || | Sbjct 3885 CTCGAAGCACTCGTTGTTGCCCAGGATCTGCGAAGTACTGGCAGTAGGCATAGGGGCAAG 3826 Query 106015 CAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA 106074 || |||||||| |||| || | ||||||| | ||| |||| |||||||| | Sbjct 3825 CAGCAGACTGTTGCGAATGCCGTGCTCCTTGACCTGCTCCCTGAGGTTCTCCCAGTCCCA 3766 Query 106075 GTTG--AGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGA 106132 | | || || ||||| |||| |||| || || || || | || | || | |||| Sbjct 3765 GAGGTCAGAA-GGCTTCACATTCC-ACATGTCGAACTGGAGAATACCCTCAGAGGCGGGA 3708 Query 106133 GAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAG 106191 || |||| || || |||| ||| | | | |||| | ||| | || || Sbjct 3707 GAGCCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTGCACCGAA-GCAGTGAG 3649 Query 106192 GGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATC 106251 || || || || ||||| || ||||| | || | ||| || || || || Sbjct 3648 GGCAGCATGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGAGACTC 3589 Query 106252 -AAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATA 106309 ||| || | ||| || | || || |||| || ||||| || ||||| | |||||| Sbjct 3588 GAAAGGCAT-GCG-CAGAGCAAGGAAAGCATCAGCAAGACCCTGGACACCAACACCAATG 3531 Query 106310 GGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATG 106369 |||| ||||||||| || || || || | ||| || || || ||| || Sbjct 3530 GGTCGGTGTCGCATGTTGCTGTTGCGAGCTTCCGTAACAGGGTAGTGGTTCACGTCGATA 3471 Query 106370 ACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAA 106429 | | ||| || || |||| || ||||| || || | || | | ||| | Sbjct 3470 ATCCTGTTCAGGTTGCGAACGACAACCTGTGTGACGTCGTGCAACTTCTGGAAGTCATA- 3412 Query 106430 GTGCGAGTCTCTTCAT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACA 106486 || || || || | ||| || || ||||| | || || | ||||| ||| Sbjct 3411 --GCAAGCATCATCGTAGTTGATGAACGAAGGCAGGGCCAGAGAAGCAAGGTTGCAGACA 3354 Query 106487 GCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATC 106546 || |||||| | |||||| | ||| || || || | ||||| || || Sbjct 3353 GCAACCTCATCAGGGGCGCAGTACTCGATAATCTCGGTGCAGAGATTGGAGCTACGGATG 3294 Query 106547 GTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGC 106606 || |||| ||||| ||||| ||||| |||||| ||||||||||||||| |||| Sbjct 3293 GTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGG 3234 Query 106607 GTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAAT 106665 | || ||||| ||||| | || ||| || || | ||| | | || | | || || Sbjct 3233 TTGCCGGTCTCGGTCTGCGCCTCGAGGATGGCATACCAGAGCTTCTGGGCCT----TCAT 3178 Query 106666 GGCGTTG-GCCCGT--CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACC 106722 || ||| | || | ||| || ||| |||||| ||| || || || |||||||| | Sbjct 3177 GGTCTTGCGACCCTTGCCCGCCTTCTCATACTTTTCGTAAAGAGCCTCGAACTCCTC-GC 3119 Query 106723 CACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCT 106781 || || ||||| ||||| || || || ||||| | || | ||| | ||| || Sbjct 3118 CATAGCAGTCGGCCAGACCGGGGCACTCGTTGGGACACATGAGGGTCCAGTCACCGTTCT 3059 Query 106782 CCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACC 106841 ||| || ||||||||||| || || |||||||| || | || || || | | Sbjct 3058 TCTCGACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCCAGGAACAGGTCGCGGGCGC 2999 Query 106842 GAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCC 106901 | |||| || | || ||||| || | ||||||||||| | || ||| ||||||| Sbjct 2998 GGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAAGACATCTGCGTGCC 2939 Query 106902 ATGGCTCAAGATAGACTGCGA------TAGATCCCTTTCGACGCCCAGCTTGATTTACAT 106955 | |||||||| |||| || | || || ||| | | ||| | || | || | Sbjct 2938 AGGGCTCAAGGTAGATGGCAAAGGCACCAGGTCGCTT--GTTG-CCACCCTGGTCGACGT 2882 Query 106956 AGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTG 107015 | || || ||| ||| || || |||||||| || | | ||| | || ||| || | Sbjct 2881 ACCGGGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACACCGTTGGAGGTACCGTTGG 2822 Query 107016 TCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAG 107075 | || || ||| | |||| | | |||| || || || ||||| || | Sbjct 2821 TACCAGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGACGTTCAGGCCGATACCACCCG 2762 Query 107076 CCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCT 107135 || ||| ||||| ||||| | | ||||| |||| ||||| | || ||||| Sbjct 2761 CCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCATAAATACCCTCAATGCTGTCCT 2702 Query 107136 CCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGA 107195 | || || ||| |||||||| ||||| ||| || || |||||||||||||||| Sbjct 2701 CTTTCATGTCGACCAGGAAGCATGAGGACAGCTGAGGCTGGGGAGTACCAGCATTGAAGA 2642 Query 107196 GGGTTGGTGTTGCGTGAATGAACA--TACCTTGGGACATCTTGTCGTATGTCTCCAAGAC 107253 |||| || | || || |||| | | || |||||| || ||| ||||||| ||| Sbjct 2641 GGGTGGGGGAGGCATGGGTGAAGAATTTGCT--CGACATCAGGTTGTAGGTCTCCAGGAC 2584 Query 107254 AGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGG 107310 | ||||| || || || |||||||| | ||||||||| | ||||| ||||| Sbjct 2583 ACGCTCAATATCGTCACCCCAGATGCCGACAGACACACGCATGATCATGTGCTGGGG 2527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589789078364280