Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680665.1_202016-07-06]
25,997 sequences; 50,938,851 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq7038 109 4e-19
seq4683 86.0 5e-12
seq1449 82.4 6e-11
>seq7038
Length=2261
Score = 109 bits (120), Expect = 4e-19
Identities = 200/289 (69%), Gaps = 7/289 (2%)
Strand=Plus/Minus
Query 29686 TGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGTTCTCCACC 29745
|||||||| || |||| | |||||||| ||||| | |||| | | | ||| ||
Sbjct 580 TGAGGGTCATAGCCCTTGATAACAAAATCCTCCGCCTTCCACCCGTCGATGCT-TCCGCC 522
Query 29746 CTCCTGT----TTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTT 29801
|| || | | ||| ||| |||||| | |||||| | ||| ||||| || ||
Sbjct 521 CTTCTCTCGAGTAATCTCCAGCTCTGGAAAGTCACGGGGCTCGCGCTCAAGCTGCGTGTT 462
Query 29802 CAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTG-GACAAACTCTC 29860
|| | |||||||| || ||||||||||| || || |||| | ||| | | || |
Sbjct 461 GAGAGCATCCACGTGGTCGAGGTAGACGTGCGCATCGCCCATGACGTGAGTGAGGCT-GC 403
Query 29861 CCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGT 29920
| || | | || |||||| |||||||||| || || || | ||||||||| ||||
Sbjct 402 CAGGCACCAATTCGCAGACGTGCGCCATCATGTGTGTCAGCAGTGCGTAGCTGGCAATGT 343
Query 29921 TAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 29969
| || || || ||||| |||||||| | || | ||||||||| || ||
Sbjct 342 TGAACGGGACGCCGAGACCCATGTCGCAGGATCGCTGGTAGAGTTGGCA 294
>seq4683
Length=3708
Score = 86.0 bits (94), Expect = 5e-12
Identities = 156/226 (69%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 30159 GTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 30218
|||||| || || || || | ||| ||||| |||||||| || || || || || | ||
Sbjct 30 GTACTCGGCGCCAAAGTGTCGCCATTGGAAGCCGTACACGGGGCCGAGATCGCCGACCTC 89
Query 30219 CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 30278
| ||| | || ||| ||||| | || || | ||| || ||| |||||||||||||
Sbjct 90 GCGGTGGTTGAGGCCGAGGTTGTCGAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTT 149
Query 30279 TACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCT 30337
| || |||| ||| ||||| |||| ||||| || |||||| || ||||
Sbjct 150 GATGCCGGCCTCGCTGAGGCTGGTGGAGGATGTGTTGCCCTC-GATGAACCAGAGGAGCT 208
Query 30338 CCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383
| | | |||||| ||||| | |||||| |||||||||||
Sbjct 209 CGGCGATGACGGCGCGGGTGAAGACGCGCTTGGTGGTGAGGAGGGG 254
>seq1449
Length=7394
Score = 82.4 bits (90), Expect = 6e-11
Identities = 129/180 (72%), Gaps = 6/180 (3%)
Strand=Plus/Plus
Query 52016 CGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT- 52074
||||||||| | ||||||| ||| | || |||| |||||||||||||| ||
Sbjct 5522 CGTCAAGGTCCGTGTGAGGACGACCAAGATTCCCCAGATTGGCGACAAGTTTGCCTCTCG 5581
Query 52075 TCACGGCGCAAAAGGGGACG--TGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTTCGA 52132
|||||| || ||||| || || | | ||| | | | ||||||| |||||||||
Sbjct 5582 TCACGGA-CAGAAGGGTACCATTGGTGTGACGTACCGTC--AGGAGGATATGCCCTTCAG 5638
Query 52133 CAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCATCCAGGATGAC 52192
|| ||| || ||| || ||| | ||||| |||||||||||| |||| || | |||||
Sbjct 5639 CAGGGAGGGTGTGACACCGGACATTATCATTAACCCCCACGCCATTCCGTCGCGAATGAC 5698
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408488134238081
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |