Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680665.1_202016-07-06] 25,997 sequences; 50,938,851 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq7038 109 4e-19 seq4683 86.0 5e-12 seq1449 82.4 6e-11 >seq7038 Length=2261 Score = 109 bits (120), Expect = 4e-19 Identities = 200/289 (69%), Gaps = 7/289 (2%) Strand=Plus/Minus Query 29686 TGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGTTCTCCACC 29745 |||||||| || |||| | |||||||| ||||| | |||| | | | ||| || Sbjct 580 TGAGGGTCATAGCCCTTGATAACAAAATCCTCCGCCTTCCACCCGTCGATGCT-TCCGCC 522 Query 29746 CTCCTGT----TTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTT 29801 || || | | ||| ||| |||||| | |||||| | ||| ||||| || || Sbjct 521 CTTCTCTCGAGTAATCTCCAGCTCTGGAAAGTCACGGGGCTCGCGCTCAAGCTGCGTGTT 462 Query 29802 CAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTG-GACAAACTCTC 29860 || | |||||||| || ||||||||||| || || |||| | ||| | | || | Sbjct 461 GAGAGCATCCACGTGGTCGAGGTAGACGTGCGCATCGCCCATGACGTGAGTGAGGCT-GC 403 Query 29861 CCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGT 29920 | || | | || |||||| |||||||||| || || || | ||||||||| |||| Sbjct 402 CAGGCACCAATTCGCAGACGTGCGCCATCATGTGTGTCAGCAGTGCGTAGCTGGCAATGT 343 Query 29921 TAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 29969 | || || || ||||| |||||||| | || | ||||||||| || || Sbjct 342 TGAACGGGACGCCGAGACCCATGTCGCAGGATCGCTGGTAGAGTTGGCA 294 >seq4683 Length=3708 Score = 86.0 bits (94), Expect = 5e-12 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 30159 GTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 30218 |||||| || || || || | ||| ||||| |||||||| || || || || || | || Sbjct 30 GTACTCGGCGCCAAAGTGTCGCCATTGGAAGCCGTACACGGGGCCGAGATCGCCGACCTC 89 Query 30219 CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 30278 | ||| | || ||| ||||| | || || | ||| || ||| ||||||||||||| Sbjct 90 GCGGTGGTTGAGGCCGAGGTTGTCGAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTT 149 Query 30279 TACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCT 30337 | || |||| ||| ||||| |||| ||||| || |||||| || |||| Sbjct 150 GATGCCGGCCTCGCTGAGGCTGGTGGAGGATGTGTTGCCCTC-GATGAACCAGAGGAGCT 208 Query 30338 CCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383 | | | |||||| ||||| | |||||| ||||||||||| Sbjct 209 CGGCGATGACGGCGCGGGTGAAGACGCGCTTGGTGGTGAGGAGGGG 254 >seq1449 Length=7394 Score = 82.4 bits (90), Expect = 6e-11 Identities = 129/180 (72%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 52016 CGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT- 52074 ||||||||| | ||||||| ||| | || |||| |||||||||||||| || Sbjct 5522 CGTCAAGGTCCGTGTGAGGACGACCAAGATTCCCCAGATTGGCGACAAGTTTGCCTCTCG 5581 Query 52075 TCACGGCGCAAAAGGGGACG--TGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTTCGA 52132 |||||| || ||||| || || | | ||| | | | ||||||| ||||||||| Sbjct 5582 TCACGGA-CAGAAGGGTACCATTGGTGTGACGTACCGTC--AGGAGGATATGCCCTTCAG 5638 Query 52133 CAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCATCCAGGATGAC 52192 || ||| || ||| || ||| | ||||| |||||||||||| |||| || | ||||| Sbjct 5639 CAGGGAGGGTGTGACACCGGACATTATCATTAACCCCCACGCCATTCCGTCGCGAATGAC 5698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408488134238081