Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680665.1_202016-07-06]
25,997 sequences; 50,938,851 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq10473 188 9e-42
seq2597 156 5e-32
seq4116 129 7e-24
seq969 125 9e-23
seq1832 120 4e-21
seq3201 118 1e-20
seq1314 93.3 5e-13
>seq10473
Length=1618
Score = 188 bits (208), Expect = 9e-42
Identities = 279/396 (70%), Gaps = 6/396 (2%)
Strand=Plus/Minus
Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159
|||||||| ||||| | ||| |||||||||||| | || || ||| |
Sbjct 435 GGCGAGTCCCACGGCAAGTCAGTCTCGTGCATCATCGACAACTGCCCCCCCAACATTGCC 376
Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219
|| ||||||||||||| ||||| ||| | | || ||||| ||||||||| || |
Sbjct 375 CTCACCGAGGCCGACATTCAGCCCCAGCTCAACCGCCGCCGCCCGGGCCAGTCGGCCATC 316
Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279
| ||||| || ||||| ||||| |||| |||||| |||||||| ||||||||| ||
Sbjct 315 ACGACGCCCCGGAACGAAAAGGATCGTGTCACCATCCACTCGGGCACCGAGAACGGCGTC 256
Query 18280 ACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTAT 18339
|| |||||| | || || |||| || ||||| |||||||||||| |||||
Sbjct 255 ACCCTCGGCACCCCGATCCTCCTCACCGTCCCCAACGAGGACCAGCGGCCCAAGGACTAC 196
Query 18340 TCCGACATGTGCAAGG------TGCCGCGGCCCTCACACGCCGACTACACCTACATGGCC 18393
||||| | || | ||||| ||| |||||||||| |||||| |||
Sbjct 195 GGCGACAAGACCATCGACCTCTACCCGCGCCCCAGCCACGCCGACTGGACCTACCTGGAA 136
Query 18394 AAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATG 18453
||||||||| ||||||| ||||| || || || || ||||| || |||||| ||
Sbjct 135 AAGTACGGCGTCAAGGCCTCGTCCGGTGGTGGTCGCAGCTCTGCTCGTGAGACCATCGCT 76
Query 18454 CGCGTCGCCGCCGGCGCGGTCGCCGAGAAATGGCTC 18489
| ||||||||||| || ||||| || || ||||||
Sbjct 75 AGAGTCGCCGCCGGTGCTGTCGCTGAAAAGTGGCTC 40
>seq2597
Length=5433
Score = 156 bits (172), Expect = 5e-32
Identities = 214/291 (74%), Gaps = 15/291 (5%)
Strand=Plus/Minus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||| ||||| ||| ||| | |||||| ||||| ||||| ||||||||||| |||||
Sbjct 3910 ACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCAGGCATGAGGCCACGCTT 3851
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGC-CCG-AGAAAAAGATGCCCTCGACGGCGGCA 869296
||||||||| ||||||| | | || || ||| ||| ||||| ||||||||||| |||
Sbjct 3850 CTTGAGCCAGAAGATGGAG--GCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCAGCA 3793
Query 869297 AAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATC 869353
||| ||| ||| |||| |||||| | |||| | |||| | |||||| ||
Sbjct 3792 AAGGCGACGAGACGCTGAGCAAAG--GACGAG----TTCTTGTCCTGGATCCATCGGATG 3739
Query 869354 GCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTC 869412
|||||||||||||| || | | | || | || || |||||| ||||||| |||
Sbjct 3738 GCCCAGTCGGCCTTCTTGCGGATACAGGGGATGGTCTCAATGGCGTTGAAGAGGTAGGTT 3679
Query 869413 CTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463
| || || || ||||||| |||||||| || |||||||| ||||||||
Sbjct 3678 C-GTTGAGCTGGCTCCTTGATGTAGGTGTCAATGAGGAGCGAGTAGGTCTC 3629
Score = 154 bits (170), Expect = 2e-31
Identities = 185/250 (74%), Gaps = 1/250 (0%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || || || ||| |||||| |||||||||||||| |||| |||||
Sbjct 4224 GCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATG 4165
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | ||||||| ||| ||| ||||| | ||
Sbjct 4164 TTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCGAGGGCGACG 4105
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| |||||||||||||| |||||||||||||| ||||||| |||||||||||||||
Sbjct 4104 AGGAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGC 4045
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || || || | |||| ||| ||||| | ||| || |||||| ||| ||||
Sbjct 4044 AGGGCGCAGGGGAGGGCCTCGGTCAGGAACTCCTGCTCAATGGTGACGGCATCGGTGATG 3985
Query 868931 ATCTGCCTGG 868940
|| | |||||
Sbjct 3984 ATGT-CCTGG 3976
>seq4116
Length=4278
Score = 129 bits (142), Expect = 7e-24
Identities = 299/448 (67%), Gaps = 17/448 (4%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||||||||| || || |||| ||| ||||| || |||||||| || ||||||||
Sbjct 2892 CTGGTCGACGTACCGGGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACACCGTTGGA 2833
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|||||||| || || | ||| | ||| | ||| || | ||| || | |||
Sbjct 2832 GGTACCGTTGGTACCAGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGACGTTCAGGCC 2773
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||| || || ||| ||||||||| | || || ||||| || || || || |||||
Sbjct 2772 GATACCACCCGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCATAAATACCCTC 2713
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||| | |||||||| || || ||||| || || || || || | || ||
Sbjct 2712 AATGCTGTCCTCTTTCATGTCGACCAGGAAGCATGAGGACAGCTGAGGCTGGGGAGTACC 2653
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
|| |||||||| ||||| | || |||||| || | | |||||| || ||||||
Sbjct 2652 AGCATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAATTTGCTCGACATCAGGTTGTAGGT 2593
Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424
| || || ||| | | |||||| |||| || ||||| | ||
Sbjct 2592 CTCCAGGACACGCTCAA---TATCGTC-----------ACCC-CAGATGCCGACAGACAC 2548
Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484
||||||| ||||| |||||| ||||| || | ||| | |||| ||||||||
Sbjct 2547 ACGCATGATCATGTGCTGGGGACGCTCAACAATCTTGCCATCAATCTTGAGGAGGTAGGA 2488
Query 1630485 CCGGCGCATG-GTCATGAGGCCAAAGTA 1630511
| || || | ||| ||| |||||||||
Sbjct 2487 TC-GCTCAAGAGTCTTGAAGCCAAAGTA 2461
Score = 113 bits (124), Expect = 6e-19
Identities = 288/443 (65%), Gaps = 8/443 (2%)
Strand=Plus/Minus
Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGG-CCGACGTCGTCGTACCCAGGTTCTGCTGGTTG 1628220
||| || ||||||||||| || |||| | ||| | || |||||||||| |||||||
Sbjct 3331 ACTCGATAATCTCGGTGCAGAGATTGGAGCTACG-GATGGTGCCCAGGTTCTTCTGGTTG 3273
Query 1628221 GTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCC 1628280
| | ||||| | |||||||| ||||||| |||| |||||||||| ||||||||
Sbjct 3272 CTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGCGCC 3213
Query 1628281 GCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCTNNNNN 1628340
||| |||||| |||||| || | || || | | || | ||||
Sbjct 3212 TCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATGGTCTTGCGACCCTTGCCCGCCTTC 3153
Query 1628341 NNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCC 1628400
|| || || |||| ||||| ||| ||| ||||| |
Sbjct 3152 TCATACTTTTCGTAAAGAGCCTCGAACTCCTCGCCATAGCAGTCGGCCAGACCGGGGCAC 3093
Query 1628401 TCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCG---CGGCGCATAAAGAGG 1628457
||| ||||| | ||| | ||||| ||||| || | || || ||| |||||
Sbjct 3092 TCGTTGGGACACATGAGGGTCCAGT---CACCGTTCTTCTCGACACGCTTCATGAAGAGA 3036
Query 1628458 TCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTC 1628517
|| |||| || || || |||||||| || ||| |||||||||||||||||||
Sbjct 3035 TCGGGAATCCAGAGAGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTC 2976
Query 1628518 TTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAG 1628577
|| ||||| || | || | | || |||||||| ||||| |||||| |||||||
Sbjct 2975 TTGCGCAGGTCAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAG 2916
Query 1628578 GCGCCCTTGCGCTTGCCGCCGCC 1628600
|| || |||||| ||| ||
Sbjct 2915 GCACCAGGTCGCTTGTTGCCACC 2893
Score = 86.0 bits (94), Expect = 8e-11
Identities = 134/189 (71%), Gaps = 2/189 (1%)
Strand=Plus/Minus
Query 1627293 CGTCCACAGGCCGCGCGCCATCA-GGCGCTTGACCAGGTGGCGGTTGACCACGGTAAAGT 1627351
|| ||||||||| | | || || || ||||| ||| | ||||||| || || |
Sbjct 3987 CGACCACAGGCC-CATGTCAACAAGGTCCTTGAGCAGCCAGGGGTTGACGACCTGGAACT 3929
Query 1627352 CGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCGGTGT 1627411
|||| | ||| || |||||| |||||||||| |||| |||| | |||| |||
Sbjct 3928 CGCCAGCGAGGACACGGCGCTGGTAGATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTGT 3869
Query 1627412 TGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTGCGCA 1627471
|||||||||||||||| || |||| || ||||| | || | || || |||||| |
Sbjct 3868 TGCCCAGGATCTGCGAAGTACTGGCAGTAGGCATAGGGGCAAGCAGCAGACTGTTGCGAA 3809
Query 1627472 GGCCGTGCT 1627480
||||||||
Sbjct 3808 TGCCGTGCT 3800
>seq969
Length=8269
Score = 125 bits (138), Expect = 9e-23
Identities = 93/109 (85%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| ||||||| |||||||||||||| || || ||| | || |||||| | || ||||||
Sbjct 8062 GCCTCCAACTATCTCGACATCAAGCCCCTTCTTGATGTCGGCTGCAAGACCGTCGCCAAC 8003
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||||||| ||||||||||| || ||||| || |||||||
Sbjct 8002 ATGATCAAGGGCAAGTCTCCCGAGGAGATTCGGAAGACTTTCAACATCA 7954
>seq1832
Length=6077
Score = 120 bits (132), Expect = 4e-21
Identities = 140/189 (74%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 1574046 AAGAGGATCGACCTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGC 1574105
|||| | || ||||||| |||| ||||||||| || ||||||||||||| || ||| ||
Sbjct 155 AAGAAGGTCACCCTGCCGGCCGGCCGCCACAAGCTGGTCATCCTCGACGAAGCTGACAGC 214
Query 1574106 CTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACG 1574165
| || |||| |||||||| || || || |||||||||| || ||||||||||
Sbjct 215 ATGACCTCGGGCGCCCAGCAAGCACTCCGACGAACCATGGAAATCTACTCCAACACGACC 274
Query 1574166 CGCTTTGCCCTGGCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGC 1574225
| || ||| | || |||||| ||| | | |||||||| |||| ||| || |||
Sbjct 275 AGATTCGCCTTTGCCTGCAACCAGTCCAACAAGATCATCGAGCCCCTACAATCGCGATGC 334
Query 1574226 GCCATTCTG 1574234
||||| |||
Sbjct 335 GCCATCCTG 343
>seq3201
Length=4937
Score = 118 bits (130), Expect = 1e-20
Identities = 109/138 (79%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106
||||||| ||||||||| || || ||||| || || ||||| | ||||||||||||
Sbjct 4788 GACAGCACCGGCGGCACCGTCACCTGCGTCATCCGTAATGTGCCCTCTGGCCTCGGCGAG 4729
Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166
|| ||||| |||||| | |||||| ||||| ||||||||| |||| ||||| ||| |
Sbjct 4728 CCCTGCTTCGACAAGCTGCAGGCCGTCCTCGCACACGCCATGATGTCCATCCCCGCCGTC 4669
Query 19167 AAGGGATTCGAGATTGGC 19184
|||| |||||| |||||
Sbjct 4668 AAGGCCTTCGAGTTTGGC 4651
>seq1314
Length=7778
Score = 93.3 bits (102), Expect = 5e-13
Identities = 257/386 (67%), Gaps = 16/386 (4%)
Strand=Plus/Plus
Query 511949 GGCGTGGACGCCTCGCGCAGTCACACCAACGACATCAACCGCGTGGCCGCCGTGCTGGGC 512008
||||| ||||| ||||| | ||||||||||| | | |||| || ||| | ||
Sbjct 6721 GGCGTCGACGCTTCGCGGACATACACCAACGACCTGTGGCAAGTGGTCGAGGTGTTTGGT 6780
Query 512009 ATCGAGGCCGCCGTGGCCGTGCTCTTTTCC--GAGATCAAGGCCGTCATCTCCTTTGACG 512066
|||||||| ||| | || ||||| || ||| | | ||| | | |||||||
Sbjct 6781 ATCGAGGCAGCCC-GTTCG-GCTCTGGTCAAGGAGTTGACCAACGTGCTGGCGTTTGACG 6838
Query 512067 GCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACACCATGTGCTGCCGCGGAT 512126
| ||||||||||| | || ||| |||||||| || || |||| | | | ||||
Sbjct 6839 GTTCCTACGTCAACCATCGTCACATTGCGCTGCTGACAGATGTCATGACGTACAGAGGAT 6898
Query 512127 CGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGCGCCGACCACGGCTTC-CTGTCGCGG 512185
| | ||| || || || ||||| ||||||| || || ||| | | | ||| |||
Sbjct 6899 CCATCTCGGCTGTGACCCGACACGGTATCAACCGTGCTGA-CACTGGTGCTCTGATGCGT 6957
Query 512186 GCCTCTTTCGAAGAGACCGTCGACATCCTCTTTGACGCGGCGGCCTTTGCCGAGACCGAC 512245
|||||||| ||||| ||||| ||| | | || || || || | || | || | |
Sbjct 6958 TGTTCTTTCGAGGAGACGGTCGAGATCTTGCTCGAGGCTGCCGCGTCTG--GTGAGCTAG 7015
Query 512246 AAGATCACCGACG--GCTCGGTGACCGAGCCCATCATCCTGGGCCAGACGGCGCCCATCG 512303
| || |||| | ||||| || || |||| |||||||||| |||||| || |
Sbjct 7016 ATGACTGCCGAGGTATCTCGGAGAACG------TCATGCTGGGCCAGATGGCGCCAATGG 7069
Query 512304 GCACGGCCATCTCGGACGTGCTCGTG 512329
|||||| | || || |||||| ||
Sbjct 7070 GCACGGGTAACTTTGATGTGCTCCTG 7095
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6105005764436049
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