Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680665.1_202016-07-06] 25,997 sequences; 50,938,851 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2597 226 4e-53 seq4116 120 4e-21 seq1832 95.1 2e-13 >seq2597 Length=5433 Score = 226 bits (250), Expect = 4e-53 Identities = 405/572 (71%), Gaps = 31/572 (5%) Strand=Plus/Plus Query 1455765 GCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAG 1455824 || |||| | ||| ||| | |||||| || |||||||||||||| || ||||| |||||| Sbjct 3364 GCAACCA-CAGATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAG 3421 Query 1455825 GAGGTCGACCTCGGCGCCGA----CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGA 1455877 ||| | || || | || |||| ||||| ||| ||| | |||||| Sbjct 3422 GAGATTGATCTATCCAAGGATCTCCACG----ACTGGAACAACCGCCTGACTGCCGACGA 3477 Query 1455878 GCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCG 1455937 || ||| || ||| |||||||||| || ||| ||| || |||||||| || Sbjct 3478 GCAGTTCTTCGTCTCCCACATCCTCGCCTTCTT-CGCTGCCTCTGACGGCATCGTCAACG 3536 Query 1455938 AGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACG 1455997 ||||||| | || || || | |||||||| | || ||||| || | || |||| Sbjct 3537 AGAACCTTGTCGAGCGATTCAGCGGCGAGGTCCAGATCCCCGAGGCCCGATGCTTCTACG 3596 Query 1455998 GGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCT 1456057 | ||||||||| || || ||||||||||| || |||||||||||||| || ||||||| Sbjct 3597 GCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCGCTCCTCATTGACACCT 3656 Query 1456058 ACGTCAAGGACCCGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCG 1456116 || ||||||| || | | | | ||| ||||||| |||||| || || | || | Sbjct 3657 ACATCAAGGAGCCAG-CTCAACGAACCTACCTCTTCAACGCCATTGAGACCATCCCCTGT 3715 Query 1456117 GTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACT 1456173 | | || |||||||||||||| || |||||| ||||| | |||| | || Sbjct 3716 ATCCGCAAGAAGGCCGACTGGGCCATCCGATGGATCCAGGACAAGAA----CTCGTC-CT 3770 Query 1456174 TTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTC-TCGG-GCAGTTT 1456230 |||| |||| ||||||| |||||| | ||||||||| ||||| ||| ||| || || Sbjct 3771 TTGCTCAGCGTCTCGTCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTG 3830 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACG 1456290 | | ||||||| |||||||||||||| ||||||||||| || | | |||| ||||| Sbjct 3831 C--CTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGG-CCTGACCTTTTCCAACG 3887 Query 1456291 AATTTATCAGTCGCGACGA-AGTTTTCACCCC 1456321 | | ||| ||| ||||| || ||||| || Sbjct 3888 AGCTCATCTCTCGTGACGAGGGTCTTCACACC 3919 Score = 116 bits (128), Expect = 5e-20 Identities = 180/252 (71%), Gaps = 4/252 (2%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| ||| |||||| || ||| | ||||| | | |||| | || || || Sbjct 3983 ATCATCACCGATGCCGTCACCATTGAGCAGGAGTTCCTGACCGAGGCCCTCCCCTGCGCC 4042 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || |||||||||||||| | |||||| |||||||| || || ||||||||||||| Sbjct 4043 CTGCTCGGCATGAACGCCGAC-CTCATGAAGCAGTACATCGAGTTC-GTCGCCGACCGCC 4100 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 | |||| || |||||| || ||||| |||| | | ||||||| ||| | ||| Sbjct 4101 TCCTCGTCGCCCTCGGCAACG-AGAAGGTCTACAAGGCCACCAACCCCTTCGACTTCATG 4159 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761 ||| ||||| |||| |||||||||||||| |||||| || || || || ||| Sbjct 4160 GAGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCAG 4219 Query 1456762 AAGGCCGGCGTC 1456773 ||||| || ||| Sbjct 4220 AAGGCTGGTGTC 4231 >seq4116 Length=4278 Score = 120 bits (132), Expect = 4e-21 Identities = 335/506 (66%), Gaps = 25/506 (5%) Strand=Plus/Plus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||||| || ||| | ||||| | | | ||| ||||| ||| ||||||| Sbjct 2407 CACAAGGAGGAGCTAGACTCGGCCATTGTCTATGACCGTGACTTCCAATACCAGTACTTT 2466 Query 259742 GGTCTGGCGAC-CTTGCGCCGGTCCTACCTGACCAA-AGTGC--GCGATATTGTCGTCGA 259797 || | ||| |||| || | |||||||| ||| | || || | ||||| | | Sbjct 2467 GGCTTCAAGACTCTTGAGC-GATCCTACCTCCTCAAGATTGATGGCAAGATTGTTG---A 2522 Query 259798 GCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGA 259857 ||| |||||| | ||| |||||||||| | | ||| | |||| | || Sbjct 2523 GCGTCCCCAGCACATGATCATGCGTGTGTCTGTCGGCA--TCTGGGGT----------GA 2570 Query 259858 CAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAG-TTGTTCACCT 259916 | || | |||| || || | |||||| | |||||| |||| || |||||| Sbjct 2571 CGATA---TTGAGCGTGTCCTGGAGACCTACAACCTGATGTCG-AGCAAATTCTTCACCC 2626 Query 259917 CAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTC 259976 || | ||||| ||||| ||||| || || || | || ||| || || ||||| | Sbjct 2627 ATGCCTCCCCCACCCTCTTCAATGCTGGTACTCCCCAGCCTCAGCTGTCCTCATGCTTCC 2686 Query 259977 TGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGC 260036 || | |||||||| | || || ||||| || ||||| || |||||| || || Sbjct 2687 TGGTCGACATGAAAGAGGACAGCATTGAGGGTATTTATGATACTCTCAAGACCTGTGCCA 2746 Query 260037 TCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCG 260096 | ||||||||| ||| || || ||||| | || ||| | || ||| | ||| Sbjct 2747 TGATCTCCAAGATGGCGGGTGGTATCGGCCTGAACGTCCACCGAATCCGTGCCACTGGCT 2806 Query 260097 CCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTA 260156 | ||| | || || |||||||| |||||||| | ||||||||||| || || | Sbjct 2807 CTTACATCGCTGGTACCAACGGTACCTCCAACGGTGTCACCCCCATGCTTCGTGTCTTCA 2866 Query 260157 ACGACACGGCGCGCTACGTCGACCAG 260182 || |||| || || |||||||||||| Sbjct 2867 ACAACACTGCCCGGTACGTCGACCAG 2892 Score = 96.9 bits (106), Expect = 5e-14 Identities = 108/142 (76%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 262092 AGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACA 262151 || |||||| ||||| ||| ||| || | ||||||||||| |||| |||| |||||| Sbjct 3191 AGCTCTGGTATGCCATCCTCGAGGCGCAGACCGAGACCGGCAACCCCTTCATGCTCTACA 3250 Query 262152 AGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACAGAGGCCAAC 262210 ||||| | ||||| | ||||||||| ||||||||||||||| | || |||| Sbjct 3251 AGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCGTAG-CTCCAAT 3309 Query 262211 CTGTGCACCGAGATCGTCCAGT 262232 || ||||||||||| || ||| Sbjct 3310 CTCTGCACCGAGATTATCGAGT 3331 >seq1832 Length=6077 Score = 95.1 bits (104), Expect = 2e-13 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 332878 CAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAGGCCAG 332937 ||||||||| || || || |||| |||||||| | | ||| ||||||||| | Sbjct 343 CAGGATGGCGCATCGCGATTGTAGGGGCTCGATGATCTTGTTGGACTGGTTGCAGGCAAA 284 Query 332938 GGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGGGCCGC 332997 ||| || | ||||| |||| | |||||||||| ||||| || || ||||| | Sbjct 283 GGCGAATCTGGTCGTGTTGGAGTAGATTTCCATGGTTCGTCGGAGTGCTTGCTGGGCGCC 224 Query 332998 CGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGCAG 333054 || || | || ||| || ||||||||||||| | ||||||||| ||| |||||| Sbjct 223 CGAGGTCATGCTGTCAGCTTCGTCGAGGATGACCAGCTTGTGGCGGCCGGCCGGCAG 167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175303741567514