Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680665.1_202016-07-06]
25,997 sequences; 50,938,851 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq2597 226 4e-53
seq4116 120 4e-21
seq1832 95.1 2e-13
>seq2597
Length=5433
Score = 226 bits (250), Expect = 4e-53
Identities = 405/572 (71%), Gaps = 31/572 (5%)
Strand=Plus/Plus
Query 1455765 GCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAG 1455824
|| |||| | ||| ||| | |||||| || |||||||||||||| || ||||| ||||||
Sbjct 3364 GCAACCA-CAGATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAG 3421
Query 1455825 GAGGTCGACCTCGGCGCCGA----CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGA 1455877
||| | || || | || |||| ||||| ||| ||| | ||||||
Sbjct 3422 GAGATTGATCTATCCAAGGATCTCCACG----ACTGGAACAACCGCCTGACTGCCGACGA 3477
Query 1455878 GCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCG 1455937
|| ||| || ||| |||||||||| || ||| ||| || |||||||| ||
Sbjct 3478 GCAGTTCTTCGTCTCCCACATCCTCGCCTTCTT-CGCTGCCTCTGACGGCATCGTCAACG 3536
Query 1455938 AGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACG 1455997
||||||| | || || || | |||||||| | || ||||| || | || ||||
Sbjct 3537 AGAACCTTGTCGAGCGATTCAGCGGCGAGGTCCAGATCCCCGAGGCCCGATGCTTCTACG 3596
Query 1455998 GGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCT 1456057
| ||||||||| || || ||||||||||| || |||||||||||||| || |||||||
Sbjct 3597 GCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCGCTCCTCATTGACACCT 3656
Query 1456058 ACGTCAAGGACCCGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCG 1456116
|| ||||||| || | | | | ||| ||||||| |||||| || || | || |
Sbjct 3657 ACATCAAGGAGCCAG-CTCAACGAACCTACCTCTTCAACGCCATTGAGACCATCCCCTGT 3715
Query 1456117 GTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACT 1456173
| | || |||||||||||||| || |||||| ||||| | |||| | ||
Sbjct 3716 ATCCGCAAGAAGGCCGACTGGGCCATCCGATGGATCCAGGACAAGAA----CTCGTC-CT 3770
Query 1456174 TTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTC-TCGG-GCAGTTT 1456230
|||| |||| ||||||| |||||| | ||||||||| ||||| ||| ||| || ||
Sbjct 3771 TTGCTCAGCGTCTCGTCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTG 3830
Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACG 1456290
| | ||||||| |||||||||||||| ||||||||||| || | | |||| |||||
Sbjct 3831 C--CTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGG-CCTGACCTTTTCCAACG 3887
Query 1456291 AATTTATCAGTCGCGACGA-AGTTTTCACCCC 1456321
| | ||| ||| ||||| || ||||| ||
Sbjct 3888 AGCTCATCTCTCGTGACGAGGGTCTTCACACC 3919
Score = 116 bits (128), Expect = 5e-20
Identities = 180/252 (71%), Gaps = 4/252 (2%)
Strand=Plus/Plus
Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582
|||||| ||| |||||| || ||| | ||||| | | |||| | || || ||
Sbjct 3983 ATCATCACCGATGCCGTCACCATTGAGCAGGAGTTCCTGACCGAGGCCCTCCCCTGCGCC 4042
Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642
|| |||||||||||||| | |||||| |||||||| || || |||||||||||||
Sbjct 4043 CTGCTCGGCATGAACGCCGAC-CTCATGAAGCAGTACATCGAGTTC-GTCGCCGACCGCC 4100
Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702
| |||| || |||||| || ||||| |||| | | ||||||| ||| | |||
Sbjct 4101 TCCTCGTCGCCCTCGGCAACG-AGAAGGTCTACAAGGCCACCAACCCCTTCGACTTCATG 4159
Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761
||| ||||| |||| |||||||||||||| |||||| || || || || |||
Sbjct 4160 GAGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCAG 4219
Query 1456762 AAGGCCGGCGTC 1456773
||||| || |||
Sbjct 4220 AAGGCTGGTGTC 4231
>seq4116
Length=4278
Score = 120 bits (132), Expect = 4e-21
Identities = 335/506 (66%), Gaps = 25/506 (5%)
Strand=Plus/Plus
Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741
|||||||||| || ||| | ||||| | | | ||| ||||| ||| |||||||
Sbjct 2407 CACAAGGAGGAGCTAGACTCGGCCATTGTCTATGACCGTGACTTCCAATACCAGTACTTT 2466
Query 259742 GGTCTGGCGAC-CTTGCGCCGGTCCTACCTGACCAA-AGTGC--GCGATATTGTCGTCGA 259797
|| | ||| |||| || | |||||||| ||| | || || | ||||| | |
Sbjct 2467 GGCTTCAAGACTCTTGAGC-GATCCTACCTCCTCAAGATTGATGGCAAGATTGTTG---A 2522
Query 259798 GCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGA 259857
||| |||||| | ||| |||||||||| | | ||| | |||| | ||
Sbjct 2523 GCGTCCCCAGCACATGATCATGCGTGTGTCTGTCGGCA--TCTGGGGT----------GA 2570
Query 259858 CAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAG-TTGTTCACCT 259916
| || | |||| || || | |||||| | |||||| |||| || ||||||
Sbjct 2571 CGATA---TTGAGCGTGTCCTGGAGACCTACAACCTGATGTCG-AGCAAATTCTTCACCC 2626
Query 259917 CAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTC 259976
|| | ||||| ||||| ||||| || || || | || ||| || || ||||| |
Sbjct 2627 ATGCCTCCCCCACCCTCTTCAATGCTGGTACTCCCCAGCCTCAGCTGTCCTCATGCTTCC 2686
Query 259977 TGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGC 260036
|| | |||||||| | || || ||||| || ||||| || |||||| || ||
Sbjct 2687 TGGTCGACATGAAAGAGGACAGCATTGAGGGTATTTATGATACTCTCAAGACCTGTGCCA 2746
Query 260037 TCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCG 260096
| ||||||||| ||| || || ||||| | || ||| | || ||| | |||
Sbjct 2747 TGATCTCCAAGATGGCGGGTGGTATCGGCCTGAACGTCCACCGAATCCGTGCCACTGGCT 2806
Query 260097 CCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTA 260156
| ||| | || || |||||||| |||||||| | ||||||||||| || || |
Sbjct 2807 CTTACATCGCTGGTACCAACGGTACCTCCAACGGTGTCACCCCCATGCTTCGTGTCTTCA 2866
Query 260157 ACGACACGGCGCGCTACGTCGACCAG 260182
|| |||| || || ||||||||||||
Sbjct 2867 ACAACACTGCCCGGTACGTCGACCAG 2892
Score = 96.9 bits (106), Expect = 5e-14
Identities = 108/142 (76%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 262092 AGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACA 262151
|| |||||| ||||| ||| ||| || | ||||||||||| |||| |||| ||||||
Sbjct 3191 AGCTCTGGTATGCCATCCTCGAGGCGCAGACCGAGACCGGCAACCCCTTCATGCTCTACA 3250
Query 262152 AGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACAGAGGCCAAC 262210
||||| | ||||| | ||||||||| ||||||||||||||| | || ||||
Sbjct 3251 AGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCGTAG-CTCCAAT 3309
Query 262211 CTGTGCACCGAGATCGTCCAGT 262232
|| ||||||||||| || |||
Sbjct 3310 CTCTGCACCGAGATTATCGAGT 3331
>seq1832
Length=6077
Score = 95.1 bits (104), Expect = 2e-13
Identities = 127/177 (72%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 332878 CAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAGGCCAG 332937
||||||||| || || || |||| |||||||| | | ||| ||||||||| |
Sbjct 343 CAGGATGGCGCATCGCGATTGTAGGGGCTCGATGATCTTGTTGGACTGGTTGCAGGCAAA 284
Query 332938 GGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGGGCCGC 332997
||| || | ||||| |||| | |||||||||| ||||| || || ||||| |
Sbjct 283 GGCGAATCTGGTCGTGTTGGAGTAGATTTCCATGGTTCGTCGGAGTGCTTGCTGGGCGCC 224
Query 332998 CGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGCAG 333054
|| || | || ||| || ||||||||||||| | ||||||||| ||| ||||||
Sbjct 223 CGAGGTCATGCTGTCAGCTTCGTCGAGGATGACCAGCTTGTGGCGGCCGGCCGGCAG 167
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7175303741567514
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |