Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680665.1_202016-07-06] 25,997 sequences; 50,938,851 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4116 188 9e-43 seq2597 145 9e-30 >seq4116 Length=4278 Score = 188 bits (208), Expect = 9e-43 Identities = 1105/1753 (63%), Gaps = 43/1753 (2%) Strand=Plus/Minus Query 117828 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 117887 |||| | ||| ||||||||||| |||||||| || || |||||||| | | ||| Sbjct 4259 GCCTGCGTTCGCAGGTAGTACATGCCCGTCTTCAGGCCGAGCTTCCAGCCGGCAAAGTGC 4200 Query 117888 ATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGA 117947 || || | |||| | ||| || | |||| || ||| | ||||| ||| Sbjct 4199 ATGCTGGTGATCTTGCCCATGGTGGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGA 4140 Query 117948 TCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCAC 118007 || |||||| || || || || ||||| | || || | | | || ||||| Sbjct 4139 TCAATGAAGGCACCTCGGTCGGCAGCCATCTGAACGACCTGGCGCTGCGAAATCTCCCAG 4080 Query 118008 ACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCA 118067 || ||| |||||||| ||| | || | ||||| | ||| || |||||||| | Sbjct 4079 ACGGTCTTGTAGAGGGCCTTGACCTCGGCGGGGATGTTGGGGATGTTCTGGATGGA---A 4023 Query 118068 CCCGCCTTGACCATGA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGA 118124 || || | | |||| | | ||||| | | ||||| || || || | || Sbjct 4022 CCGTTCTCGGCAATGATTCGGTTTTTCATGGCATCCGACCACAGGCCCATGTCAACAAGG 3963 Query 118125 TCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAG 118184 |||| | || ||||| || ||||| || |||||| || | | | ||| Sbjct 3962 TCCTTGAGCAGCCAGGGGTTGACGACCTGGAACTCGCCAGCGAGGACACGGCGCTGGTAG 3903 Query 118185 ATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCT 118244 || |||| ||||| ||||| |||||||| ||||| |||| ||| || | || ||| Sbjct 3902 ATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGCGAAGTACTGGCA 3843 Query 118245 GTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTG 118304 || ||||| || || | || || ||||| || | || | ||| | | | ||| || Sbjct 3842 GTAGGCATAGGGGCAAGCAGCAGACTGTTGCGAATGCCGTGCTCCTTGACCTGCTCCCTG 3783 Query 118305 AGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATA 118364 || |||||||| || | | || | | | |||||| || |||||||| ||| Sbjct 3782 AGGTTCTCCCAGTCCCAGAGGTCAGAAGGCTTCACATTCCACATGTCGAACTGGAGAATA 3723 Query 118365 CCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG 118424 || | || || || || |||| || || || || ||||| ||| |||| | | Sbjct 3722 CCCTCAGAGGCGGGAGAGCCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTGGCCAGCT-G 3664 Query 118425 GAGCTC-GCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTT 118483 | | || |||||| || || || || || || || || | || | | Sbjct 3663 CACCGAAGCAGTGAGGGCAGCATGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACG 3604 Query 118484 GGCCTCGTCGGAATCAAACGCGAGTCGGCACAA-AATAAATACATCCGCGAGACCTTGGA 118542 |||||| || || || | | || || | || || |||| || ||||| |||| Sbjct 3603 AGCCTCGGGAGACTCGAAAGGCATGCG-CAGAGCAAGGAAAGCATCAGCAAGACCCTGGA 3545 Query 118543 CACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAA 118602 |||| | ||||| || || |||| ||| || || ||||| | || || || Sbjct 3544 CACCAACACCAATGGGTCGGTGTCGCATGTTGCTGTTGCGAGCTTCCGTAACAGGGTAGT 3485 Query 118603 AATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCT 118662 ||| ||||||| ||| || || || |||||||| ||||| || || | || Sbjct 3484 GGTTCACGTCGATAATCCTGTTCAGGTTGCGAACGACAACCTGTGTGACGTCGTGCAACT 3425 Query 118663 TTTCGTAATCAAAACTGCGAGTCTCTTCAT---TGACATACTTAGGAAGGGCGATTGACG 118719 | | | | ||| | || || || || | ||| || ||| ||||| | || | Sbjct 3424 TCTGGAAGTCATA---GCAAGCATCATCGTAGTTGATGAACGAAGGCAGGGCCAGAGAAG 3368 Query 118720 CCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGT 118779 | || || || |||| |||||| | |||||| ||||| || ||||| | | Sbjct 3367 CAAGGTTGCAGACAGCAACCTCATCAGGGGCGCAGTACTCGATAATCTCGGTGCAGAGAT 3308 Query 118780 TTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGT 118839 | || || |||||||||| |||||| || || ||| ||| || ||||||| Sbjct 3307 TGGAGCTACGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGT 3248 Query 118840 AAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCG 118898 | |||||| | || | || ||||| || || | || ||| || || | ||||| | || Sbjct 3247 AGAGCATGAAGGGGTTGCCGGTCTCGGTCTGCGCCTCGAGGATGGCATACCAGAGCTTCT 3188 Query 118899 GCAGCTGGCACAGTGGCGTTGG----CTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGC 118954 | || || ||| ||| || |||| |||| || |||||| ||| || || Sbjct 3187 GGGCCTT---CA-TGGTCTTGCGACCCTTGCCCGCCTTC-TCATACTTTTCGTAAAGAGC 3133 Query 118955 TTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGA 119014 || ||||| || || | || | || || || || | || || | ||| | Sbjct 3132 CTCGAACTCCTCGCCATAGCAGTCGGCCAGACCGGGGCACTCGTTGGGACACATGAGGGT 3073 Query 119015 CCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAA 119074 ||| | ||| || ||| || |||||||||||||| || || |||||||| ||| ||| Sbjct 3072 CCAGTCACCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCCAGGAA 3013 Query 119075 GAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCAT 119134 || || || ||| | || || | || || || |||| || | || || | Sbjct 3012 CAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAA 2953 Query 119135 GATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA------CC 119188 || ||| |||||||| || || ||||| | || | | || | | || || Sbjct 2952 GACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAGGCACC---AGGTCGCTTGTTGCC 2896 Query 119189 AGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATC 119248 | |||||| || |||| |||||| ||| || ||||||||||| || ||| ||| | Sbjct 2895 ACCCTGGTCGACGTACCGGGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACACCGTT 2836 Query 119249 GGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCGTGGATGTGC 119306 ||| || || || || ||| || ||| | | |||| | || ||||| || | Sbjct 2835 GGAGGTACCGTTGGTACCAGCGATGTAAGAGCC--AGTGGCACGGATTCGGTGGACGTTC 2778 Query 119307 ATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATC 119366 | || ||||| || ||| ||| ||||| || || | ||||| | | || || Sbjct 2777 AGGCCGATACCACCCGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCATAAATA 2718 Query 119367 CCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGT 119426 || || || ||| | || | ||| |||||||| |||| |||||| ||| Sbjct 2717 CCCTCAATGCTGTCCTCTTTCATGTCGACCAGGAAGCATGAGGACAGCTGAGGCTGGGGA 2658 Query 119427 GTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACA--TACCTTGGGACATCTTGT 119484 |||||||| |||||||| || || | || ||| |||| | | || |||||| || Sbjct 2657 GTACCAGCATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAATTTGCT--CGACATCAGGT 2600 Query 119485 CGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAA 119544 ||||||||||| ||| ||| || || || || |||| || || ||||| | Sbjct 2599 TGTAGGTCTCCAGGACACGCTCAATATCGTCACCCCAGATGCCGACAGACACACGCATGA 2540 Query 119545 ACATGTATTGGGG 119557 ||||| ||||| Sbjct 2539 TCATGTGCTGGGG 2527 >seq2597 Length=5433 Score = 145 bits (160), Expect = 9e-30 Identities = 530/815 (65%), Gaps = 21/815 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || ||||||||||||||||| ||||| || | | | ||| |||||||| Sbjct 4215 TAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATG 4156 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || || || ||||| | | || | | | || | | | | |||||| || Sbjct 4155 AAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCGAGGGCGAC-GAGGAGGCG 4097 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | |||| |||| ||||||| ||| |||| |||||| |||| ||| || Sbjct 4096 GTCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGCAGGGCGCA 4037 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||| || || | |||| ||| ||||||| || || || | |||| | || Sbjct 4036 GGGGAGGGCCTCGGTCAGGAACTCCTGCTCAATGGTGACGGCATCGGTGATGATGTCCTG 3977 Query 129967 AATGGTCTCCGTGC---CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 ||| || | ||| || | | ||| | | | || ||| || | |||| || Sbjct 3976 GATGACCTGCTTGCTGGCACGGCCCTTGAGGTGGGAGTGGAGGAGG--CATG-CAAAGTC 3920 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| |||||||||||||| |||||||| || || || ||| ||| || |||||||| Sbjct 3919 GGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCAGGCATGAG 3860 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 || |||||||| | |||||| || | ||| | || ||||||||| ||||| || Sbjct 3859 GCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGAC 3800 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGT-ATCAAACCACTTCA 130202 || || || | |||||||| ||||||||| || | |||| | | ||| | Sbjct 3799 GGCAGCAAAGGCGACGAGACGCTGAGCAAAGGA-CGAGTTCTTGTCCTGGATCCATCGGA 3741 Query 130203 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT 130262 | ||||| | ||||| || |||||| |||| ||||| || || | ||||| | Sbjct 3740 TGGCCCAGTCGGCCTTCTTGCGGATACAGGGGATGGTCTCAATGGCGTTGAAGAGGTAGG 3681 Query 130263 TCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGA 130322 | || | ||| || |||||||| | || ||||| || || || ||| |||| Sbjct 3680 TTCGTTGAGCTGGCTCCTTGATGTAGGTGTCAATGAGGAGCGAGTAGGTCTCGGAGTGGA 3621 Query 130323 CCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCA 130381 | | ||| || | ||| | ||||||| | || || ||| ||||| ||||| Sbjct 3620 TGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCATCGGGCCTCGGGGATCTGGACCTC- 3563 Query 130382 TCTGCAAAATTGTTATTGATA---TTCTCAAAAACAATTCCATCGGACCCAGCAAAAAAC 130438 | || ||| | | || | ||||| || || || || || |||| || || Sbjct 3562 GCCGCTGAATCG--CTCGACAAGGTTCTCGTTGACGATGCCGTCAGAGGCAGCGAAGAAG 3505 Query 130439 GCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCA 130495 || ||||| | | ||| ||| || | | ||| || | |||||||||| Sbjct 3504 GCGAGGATGTGGGAGACGAAGAACTGCTCGTCGGCAGTCAGGCGGTTGTTCCAGTCGTGG 3445 Query 130496 AGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 |||||||| || ||||| | |||||| |||||||| Sbjct 3444 AGATCCTTGGATAGATCAATCTCCTCGGCAGTCCA 3410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618234231751320