Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680665.1_202016-07-06] 25,997 sequences; 50,938,851 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq7038 109 4e-19 seq4683 84.2 2e-11 >seq7038 Length=2261 Score = 109 bits (120), Expect = 4e-19 Identities = 200/289 (69%), Gaps = 7/289 (2%) Strand=Plus/Minus Query 29759 TGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCCACC 29818 |||||||| || |||| | |||||||| ||||| | |||| | ||| ||| || Sbjct 580 TGAGGGTCATAGCCCTTGATAACAAAATCCTCCGCCTTCCACCCGTCGATGCT-TCCGCC 522 Query 29819 CTCCTGT----TTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTT 29874 || || | | ||| ||| |||||| | |||||| | ||| ||||| || || Sbjct 521 CTTCTCTCGAGTAATCTCCAGCTCTGGAAAGTCACGGGGCTCGCGCTCAAGCTGCGTGTT 462 Query 29875 CAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTG-GACAAACTCTC 29933 || | ||||||| || ||||||||||| || || |||| | ||| | | || | Sbjct 461 GAGAGCATCCACGTGGTCGAGGTAGACGTGCGCATCGCCCATGACGTGAGTGAGGCT-GC 403 Query 29934 CCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGT 29993 | || | | || |||||| |||||||||| || || || | ||||||||| |||| Sbjct 402 CAGGCACCAATTCGCAGACGTGCGCCATCATGTGTGTCAGCAGTGCGTAGCTGGCAATGT 343 Query 29994 TAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 30042 | || || || ||||| |||||||| | || | ||||||||| || || Sbjct 342 TGAACGGGACGCCGAGACCCATGTCGCAGGATCGCTGGTAGAGTTGGCA 294 >seq4683 Length=3708 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/228 (70%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 30232 GTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 30291 |||||| || || || || | ||| ||||| |||||||| || || || || || | || Sbjct 30 GTACTCGGCGCCAAAGTGTCGCCATTGGAAGCCGTACACGGGGCCGAGATCGCCGACCTC 89 Query 30292 CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 30351 | ||| | || ||| ||||| | || || | ||| || ||| ||||||||||||| Sbjct 90 GCGGTGGTTGAGGCCGAGGTTGTCGAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTT 149 Query 30352 --TACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAG 30408 | || | || | ||| ||| ||||| |||| ||||| || |||||| || || Sbjct 150 GATGCCGGCCTCGCTGAG-GCT-GGTGGAGGATGTGTTGCCCTC-GATGAACCAGAGGAG 206 Query 30409 CTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 ||| | | |||||| ||||| | |||||| ||||||||||| Sbjct 207 CTCGGCGATGACGGCGCGGGTGAAGACGCGCTTGGTGGTGAGGAGGGG 254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406181665247724