Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680665.1_202016-07-06] 25,997 sequences; 50,938,851 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq4644 170 4e-37 seq7763 163 7e-35 seq6050 143 6e-29 seq4116 89.7 1e-12 >seq4644 Length=3541 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| ||||| ||||| || |||||||| || || || || | || || Sbjct 2313 AGAACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCC 2372 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || || ||||| |||||||||| |||||||||||| Sbjct 2373 TCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGATCAGGAGGAATGCCTTCCTTGTCC 2432 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||| || || |||||||| || ||| ||||| || ||||| ||| Sbjct 2433 TGGATCTTCGATTTCACATTGTCAATGGTGTCGGACGATTCCACCTCAAGGGTGATAGTC 2492 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| ||||| || || | |||||| Sbjct 2493 TTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 2524 Score = 168 bits (186), Expect = 2e-36 Identities = 167/215 (78%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| ||||| || ||||| || |||||||| || || | ||||| | || ||| Sbjct 2085 AGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCT 2144 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || |||||||| || || |||||||| || | || ||||||||| Sbjct 2145 TCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 2204 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 || ||||| |||||||| || ||||| || ||| || ||||| |||||||| Sbjct 2205 TGAATCTTGGACTTCACGTTGTCAATGGTATC---GCTCGACTCGACCTCCAGAGTGATG 2261 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| ||||||||||| ||||| | |||||| Sbjct 2262 GTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 2296 Score = 158 bits (174), Expect = 3e-33 Identities = 155/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||| ||||| || || || || || || || ||||| | ||||| Sbjct 2541 AGGACGAGGTGGAGAGTTGACTCCTTCTGAATATTGTAGTCGGCGAGGGTTCGGCCATCC 2600 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||| || ||||| || ||||||||||||| || ||||| || Sbjct 2601 TCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTATCT 2660 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||| || || |||||||| ||||| ||| Sbjct 2661 TGGATCTTCGACTTGACGTTGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATAGTC 2720 Query 211083 TTTCCCGTGAGAGTCTTTAC 211102 || || ||||| ||||| || Sbjct 2721 TTACCAGTGAGGGTCTTGAC 2740 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| ||||| || || ||||| || |||||||| ||||| | || || Sbjct 2806 ACGAAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCGGAGAGAGT 2865 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || ||||||||||| ||||| || ||||| || ||||| || || | || Sbjct 2866 GCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGGGATGCC 2925 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| || || || |||||||| || ||| || |||||||| Sbjct 2926 CTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCCGAGGACTCGACCTCGAG 2985 Query 211073 AGTGATCGTCTTTCCCGT 211090 || || ||||| ||||| Sbjct 2986 GGTAATGGTCTTGCCCGT 3003 >seq7763 Length=1926 Score = 163 bits (180), Expect = 7e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||| ||| || |||||||| || || ||||| | ||||| Sbjct 1020 AGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 1079 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || || || ||||| || || | || ||||||||| Sbjct 1080 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 1139 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| || || |||||||| ||||| ||| Sbjct 1140 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATTGTC 1199 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || |||||||| ||||| ||||| | |||||| || Sbjct 1200 TTCCCCGTGAGGGTCTTGACAAAGATCTGCATCTT 1234 >seq6050 Length=2754 Score = 143 bits (158), Expect = 6e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | |||||| | ||||| |||||||||||||| |||||||| Sbjct 2426 TTCTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 2485 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || || || ||||| || || | || ||||||||||||||||| || || || || Sbjct 2486 AGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 2545 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| ||| || |||||||| ||||| ||||| ||||| || ||||| || || Sbjct 2546 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 2604 >seq4116 Length=4278 Score = 89.7 bits (98), Expect = 1e-12 Identities = 181/266 (68%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 178093 GTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCC 178149 |||||| ||||||||||| | |||| ||| || ||||| |||||||| | || Sbjct 3285 GTTCTTCTGGTTGCTCTTGCGGTTGCAG-TGG--TCCTTGTAGAGCATGAAGGGGTTGCC 3229 Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209 ||| | || ||| |||| ||| || ||| |||| |||||| | ||||| Sbjct 3228 GGTCTCGGTCTGCGCCTCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATGGTCTTGCG 3169 Query 178210 GGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATC 178269 | || || | ||||| ||||||| ||| || ||||||| ||| |||||| || Sbjct 3168 ACCCTTGCCCGCCTTCTCATACTTTTCGTAAAGAGCCTCGAACTCCTCGCCATAGCAGTC 3109 Query 178270 ATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCG 178329 | |||||||| ||| ||||| || | ||| |||| | ||||| | || || || Sbjct 3108 GGCCAGACCGGGGCACTCGTTGGGACACATGAGGGTCCAGTCACCGTTCTTCTCGACACG 3049 Query 178330 TTTCATGAAGAGGTCAGAGGTCCAGA 178355 ||||||||||| || | |||||| Sbjct 3048 CTTCATGAAGAGATCGGGAATCCAGA 3023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158765902044905