Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680665.1_202016-07-06]
25,997 sequences; 50,938,851 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq4644 170 4e-37
seq7763 163 7e-35
seq6050 143 6e-29
seq4116 89.7 1e-12
>seq4644
Length=3541
Score = 170 bits (188), Expect = 4e-37
Identities = 165/212 (78%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| ||||| ||||| || |||||||| || || || || | || ||
Sbjct 2313 AGAACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCC 2372
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| || ||||| || || ||||| |||||||||| ||||||||||||
Sbjct 2373 TCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGATCAGGAGGAATGCCTTCCTTGTCC 2432
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| |||||| || || |||||||| || ||| ||||| || ||||| |||
Sbjct 2433 TGGATCTTCGATTTCACATTGTCAATGGTGTCGGACGATTCCACCTCAAGGGTGATAGTC 2492
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| ||||| ||||| || || | ||||||
Sbjct 2493 TTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 2524
Score = 168 bits (186), Expect = 2e-36
Identities = 167/215 (78%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| ||||| ||||| || ||||| || |||||||| || || | ||||| | || |||
Sbjct 2085 AGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCT 2144
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||| || || |||||||| || || |||||||| || | || |||||||||
Sbjct 2145 TCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 2204
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079
|| ||||| |||||||| || ||||| || ||| || ||||| ||||||||
Sbjct 2205 TGAATCTTGGACTTCACGTTGTCAATGGTATC---GCTCGACTCGACCTCCAGAGTGATG 2261
Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|||||||| ||||||||||| ||||| | ||||||
Sbjct 2262 GTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 2296
Score = 158 bits (174), Expect = 3e-33
Identities = 155/200 (78%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| ||||| ||||| || || || || || || || ||||| | |||||
Sbjct 2541 AGGACGAGGTGGAGAGTTGACTCCTTCTGAATATTGTAGTCGGCGAGGGTTCGGCCATCC 2600
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| ||||| || ||||| || ||||||||||||| || ||||| ||
Sbjct 2601 TCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTATCT 2660
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| ||||| ||||| || || |||||||| ||||| |||
Sbjct 2661 TGGATCTTCGACTTGACGTTGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATAGTC 2720
Query 211083 TTTCCCGTGAGAGTCTTTAC 211102
|| || ||||| ||||| ||
Sbjct 2721 TTACCAGTGAGGGTCTTGAC 2740
Score = 141 bits (156), Expect = 2e-28
Identities = 150/198 (76%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||| ||||| || || ||||| || |||||||| ||||| | || ||
Sbjct 2806 ACGAAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCGGAGAGAGT 2865
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||| || ||||||||||| ||||| || ||||| || ||||| || || | ||
Sbjct 2866 GCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGGGATGCC 2925
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||| ||||| || || || |||||||| || ||| || ||||||||
Sbjct 2926 CTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCCGAGGACTCGACCTCGAG 2985
Query 211073 AGTGATCGTCTTTCCCGT 211090
|| || ||||| |||||
Sbjct 2986 GGTAATGGTCTTGCCCGT 3003
>seq7763
Length=1926
Score = 163 bits (180), Expect = 7e-35
Identities = 165/215 (77%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || ||| ||| || |||||||| || || ||||| | |||||
Sbjct 1020 AGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 1079
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| || ||||| || || || ||||| || || | || |||||||||
Sbjct 1080 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 1139
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| ||||||||||| || || |||||||| ||||| |||
Sbjct 1140 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATTGTC 1199
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| |||||||| ||||| ||||| | |||||| ||
Sbjct 1200 TTCCCCGTGAGGGTCTTGACAAAGATCTGCATCTT 1234
>seq6050
Length=2754
Score = 143 bits (158), Expect = 6e-29
Identities = 139/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| |||||||| || || | |||||| | ||||| |||||||||||||| ||||||||
Sbjct 2426 TTCTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 2485
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
|| || || ||||| || || | || ||||||||||||||||| || || || ||
Sbjct 2486 AGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 2545
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|||||||| ||| || |||||||| ||||| ||||| ||||| || ||||| || ||
Sbjct 2546 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 2604
>seq4116
Length=4278
Score = 89.7 bits (98), Expect = 1e-12
Identities = 181/266 (68%), Gaps = 6/266 (2%)
Strand=Plus/Minus
Query 178093 GTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCC 178149
|||||| ||||||||||| | |||| ||| || ||||| |||||||| | ||
Sbjct 3285 GTTCTTCTGGTTGCTCTTGCGGTTGCAG-TGG--TCCTTGTAGAGCATGAAGGGGTTGCC 3229
Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209
||| | || ||| |||| ||| || ||| |||| |||||| | |||||
Sbjct 3228 GGTCTCGGTCTGCGCCTCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATGGTCTTGCG 3169
Query 178210 GGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATC 178269
| || || | ||||| ||||||| ||| || ||||||| ||| |||||| ||
Sbjct 3168 ACCCTTGCCCGCCTTCTCATACTTTTCGTAAAGAGCCTCGAACTCCTCGCCATAGCAGTC 3109
Query 178270 ATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCG 178329
| |||||||| ||| ||||| || | ||| |||| | ||||| | || || ||
Sbjct 3108 GGCCAGACCGGGGCACTCGTTGGGACACATGAGGGTCCAGTCACCGTTCTTCTCGACACG 3049
Query 178330 TTTCATGAAGAGGTCAGAGGTCCAGA 178355
||||||||||| || | ||||||
Sbjct 3048 CTTCATGAAGAGATCGGGAATCCAGA 3023
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1158765902044905
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |