Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680665.1_202016-07-06]
25,997 sequences; 50,938,851 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq7038 113 3e-20
seq4683 89.7 4e-13
seq1449 82.4 6e-11
>seq7038
Length=2261
Score = 113 bits (124), Expect = 3e-20
Identities = 201/289 (70%), Gaps = 7/289 (2%)
Strand=Plus/Minus
Query 27025 TGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCCACC 27084
|||||||| || |||| | |||||||| ||||| | |||| | ||| ||| ||
Sbjct 580 TGAGGGTCATAGCCCTTGATAACAAAATCCTCCGCCTTCCACCCGTCGATGCT-TCCGCC 522
Query 27085 CTCCTGT----TTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTT 27140
|| || | | ||| ||| |||||| | |||||| | ||| ||||| || ||
Sbjct 521 CTTCTCTCGAGTAATCTCCAGCTCTGGAAAGTCACGGGGCTCGCGCTCAAGCTGCGTGTT 462
Query 27141 CAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTG-GACAAACTCTC 27199
|| | |||||||| || ||||||||||| || || |||| | ||| | | || |
Sbjct 461 GAGAGCATCCACGTGGTCGAGGTAGACGTGCGCATCGCCCATGACGTGAGTGAGGCT-GC 403
Query 27200 CCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGT 27259
| || | | || |||||| |||||||||| || || || | ||||||||| ||||
Sbjct 402 CAGGCACCAATTCGCAGACGTGCGCCATCATGTGTGTCAGCAGTGCGTAGCTGGCAATGT 343
Query 27260 TAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 27308
| || || || ||||| |||||||| | || | ||||||||| || ||
Sbjct 342 TGAACGGGACGCCGAGACCCATGTCGCAGGATCGCTGGTAGAGTTGGCA 294
>seq4683
Length=3708
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/226 (69%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 27498 GTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 27557
|||||| || || || || | ||||||||| |||||||| || || || || || | ||
Sbjct 30 GTACTCGGCGCCAAAGTGTCGCCATTGGAAGCCGTACACGGGGCCGAGATCGCCGACCTC 89
Query 27558 CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 27617
| ||| | || ||| ||||| | || || | ||| || ||| |||||||||||||
Sbjct 90 GCGGTGGTTGAGGCCGAGGTTGTCGAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTT 149
Query 27618 TACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCT 27676
| || |||| ||| ||||| |||| ||||| || |||||| || ||||
Sbjct 150 GATGCCGGCCTCGCTGAGGCTGGTGGAGGATGTGTTGCCCTC-GATGAACCAGAGGAGCT 208
Query 27677 CCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 27722
| | | |||||| ||||| | |||||| |||||||||||
Sbjct 209 CGGCGATGACGGCGCGGGTGAAGACGCGCTTGGTGGTGAGGAGGGG 254
>seq1449
Length=7394
Score = 82.4 bits (90), Expect = 6e-11
Identities = 130/180 (72%), Gaps = 6/180 (3%)
Strand=Plus/Plus
Query 48510 CGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGTGACAAGTTTGCGTC-CT 48568
||||||||| | ||||||| ||| | || |||| || ||||||||||| || |
Sbjct 5522 CGTCAAGGTCCGTGTGAGGACGACCAAGATTCCCCAGATTGGCGACAAGTTTGCCTCTCG 5581
Query 48569 TCACGGCGCAAAAGGGGACATGTGGAGCCGTCCTGACC--CAGGAGGACATGCCCTTCGA 48626
|||||| || ||||| || ||| | | | | ||| |||||||| |||||||||
Sbjct 5582 TCACGGA-CAGAAGGGTACCATTGGTGT-GACGT-ACCGTCAGGAGGATATGCCCTTCAG 5638
Query 48627 CAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGAC 48686
|| ||| || ||| || ||| | ||||| |||||||||||| |||| || | |||||
Sbjct 5639 CAGGGAGGGTGTGACACCGGACATTATCATTAACCCCCACGCCATTCCGTCGCGAATGAC 5698
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369390125916107
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |