Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20virguliforme_20[genbank_20GCA_5F001680665.1_202016-07-06]
25,997 sequences; 50,938,851 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq6050 145 2e-29
seq7763 136 1e-26
seq4644 136 1e-26
>seq6050
Length=2754
Score = 145 bits (160), Expect = 2e-29
Identities = 140/180 (78%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
||||||||| || || || || || || |||||||||||||| || ||| ||||||||
Sbjct 2605 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 2546
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
|| || ||||| ||||| |||||||| || || ||||| ||||||||||| |||||
Sbjct 2545 TGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGACT 2486
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
|||||||| || || ||||| || ||||| | || ||| |||| || ||| |||| ||
Sbjct 2485 GATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTTTCCGACTACAACATCCAGAA 2426
>seq7763
Length=1926
Score = 136 bits (150), Expect = 1e-26
Identities = 143/188 (76%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || || ||||| || || || ||||||||||||||||| || |||
Sbjct 1228 CAGATCTTTGTCAAGACCCTCACGGGGAAGACAATCACCCTCGAGGTGGAGTCTTCCGAC 1169
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||| |||||||| || || ||||| || ||||||||
Sbjct 1168 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAG 1109
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||| ||||| || || || |||||||| ||||| | || || ||| || ||| ||
Sbjct 1108 CGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAACATC 1049
Query 178104 CAAAAAGA 178111
|| || ||
Sbjct 1048 CAGAAGGA 1041
>seq4644
Length=3541
Score = 136 bits (150), Expect = 1e-26
Identities = 157/210 (75%), Gaps = 6/210 (3%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980
|| || || || || |||||||| ||||| || ||||| || ||||| || |||
Sbjct 2293 CAGATCTTTGTCAAGACTCTCACTGGAAAGACCATCACTCTGGAGGTCGAGTCGAGC--- 2237
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
|| ||||| || ||||| || |||||||||||||| || || ||||| || ||||||
Sbjct 2236 GATACCATTGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAG 2177
Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100
|| ||||||||||| || || || ||||| ||||| || | || || |||| || |||
Sbjct 2176 CAGCGACTTATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGTCCGACTACAAC 2117
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTT 178130
|||| || || || || || |||||||||
Sbjct 2116 ATCCAGAAGGAGTCGACCCTTCATCTTGTT 2087
Score = 131 bits (144), Expect = 4e-25
Identities = 140/185 (76%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| || || || || ||||||||||| || ||| || |||||||| || |||||
Sbjct 3003 ACGGGCAAGACCATTACCCTCGAGGTCGAGTCCTCGGATACCATCGACAATGTCAAGTCG 2944
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
|||||||||||||| || || ||||| || |||||||| || || || |||||||| ||
Sbjct 2943 AAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATTTTCGCCGGCAAG 2884
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
||||| || ||||| | ||||| ||||||| ||| |||| || || || || || ||
Sbjct 2883 CAGCTTGAGGATGGCCGCACTCTCTCCGATTACAACATCCAGAAGGAGTCGACCCTCCAC 2824
Query 178125 CTTGT 178129
|| ||
Sbjct 2823 CTCGT 2819
Score = 129 bits (142), Expect = 1e-24
Identities = 148/199 (74%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || || ||||| || || || ||||||||||||||||| || ||||| ||||
Sbjct 2742 TCGTCAAGACCCTCACTGGTAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACGATCG 2683
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| |||||||| ||||| || || || || || || ||||| |||||||| || || |
Sbjct 2682 ACAACGTCAAGTCGAAGATCCAAGATAAGGAGGGTATTCCTCCTGACCAGCAGCGCCTGA 2623
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
| |||||||| || ||||| || ||||| | || || ||||| || || | || || |
Sbjct 2622 TTTTCGCCGGCAAGCAGCTTGAGGATGGCCGAACCCTCGCCGACTACAATATTCAGAAGG 2563
Query 178111 AATCAACACTGCATCTTGT 178129
| ||||| || || || ||
Sbjct 2562 AGTCAACTCTCCACCTCGT 2544
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203330253312418
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |