Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq12 96.9 7e-15 seq1 89.7 1e-12 >seq12 Length=9596913 Score = 96.9 bits (106), Expect = 7e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 230452 GGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTT 230511 ||||||||| | | || ||| ||||||||||| ||||| || |||||| | | ||| Sbjct 6218418 GGCATGAACTCGAACCTCATGAAGCAGTACATCGAGTTCGTGGCAGACCGCCTCCTGGTT 6218359 Query 230512 GCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATT 230571 || || || | || || || ||| | | |||||||| | || |||||| ||| Sbjct 6218358 GCTCTCGGGAATGACAAGGTCTACCGCGCATCCAACCCCTTCGACTTCATGGAGAACATC 6218299 Query 230572 TCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGT 230631 || || || ||||||||||||||||||||||| || | || || |||| ||||| Sbjct 6218298 TCTCTGGGCGGCAAGACCAACTTCTTCGAAAAGCGCGTGGGCGAGTACCAGAAAGCTGGT 6218239 Query 230632 GTGATG 230637 || ||| Sbjct 6218238 GTCATG 6218233 >seq1 Length=15654088 Score = 89.7 bits (98), Expect = 1e-12 Identities = 172/251 (69%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 319781 AGTCAATGATAGCCGTGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTT 319840 |||||||| | | | | | || |||| | ||||||||||| || ||| | | || | Sbjct 6003088 AGTCAATGGTGGTCATCTCAGTGTCGGCGGCATCGAGATCGTGCTCAACGAACACGGTCT 6003147 Query 319841 TCAAAACA-TCCGCAGAGGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGG 319899 | | || || || |||||| || || | ||| |||| || |||||||| ||| Sbjct 6003148 TGACCTCACTCTGCTT-GGGGAAGCCCTCGACCTGCTCGTTGTTGATGGCGCGCATGAGG 6003206 Query 319900 GTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTG 319959 || || || |||| ||||| || || |||||||||||||| | || || |||||| | Sbjct 6003207 GTCGACTTGCCCGAACCGTTGGGACCGCACAGACCGTAGCGCTGGCCACGCTTCAGGCGG 6003266 Query 319960 AACCGCGTGTTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACAC 320019 | |||| | |||||| || || || |||| || || || || || || | ||| Sbjct 6003267 AGGTGCGTCTGGTTCAGCAGGATCTTGGCACCGTAGGCGAGGGAGAAGGTGCAGTTGCAC 6003326 Query 320020 AGATCCTCACC 320030 || ||||| || Sbjct 6003327 AGGTCCTCGCC 6003337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057822915730400