Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017-
06-19] 80 sequences; 53,151,282 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq1 104 3e-17
seq12 86.0 7e-12
>seq1
Length=15654088
Score = 104 bits (114), Expect = 3e-17
Identities = 414/649 (64%), Gaps = 16/649 (2%)
Strand=Plus/Plus
Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040
||||| || || | || ||||| | || ||| || |||| | || || || |||||
Sbjct 14220858 CCAGGGCACTCGTTGGGGCACATGAGCGTCCAGTCGCCGTTCTTCTCAACCCGCTTCATG 14220917
Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100
|| || || || ||||| || || | || || || | || | ||||| || ||
Sbjct 14220918 AATAGGTCTGGGATCCATAGGGCCAGGAAAAGGTCGCGGGCGCGGATCTCCTCCTTGCCG 14220977
Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160
||||| || ||||||||| | | | || | |||||||| |||| || |||
Sbjct 14220978 TGGTTCTTGCGCAGGTCGAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGATAGATG 14221037
Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220
| | | || || || ||||| || ||||| || | ||| | || ||||| || ||
Sbjct 14221038 GCAAAGGCGCCGGGGCGCTTGTTGCCACCCTGGTCGACGTAACGGGCCGTGTTGTTGAAA 14221097
Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280
|| | | ||| || | || || ||||||| || ||||| |||| ||| ||| ||
Sbjct 14221098 ACACGTAGCATGGGCACGATGCCGTTGGATGTGCCGTTGGTGCCGGCGATGTAGGAGCCC 14221157
Query 54281 CTGGCACGAATAT--TACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338
|||| || || | ||||| | || || || || ||||| || ||||| | |
Sbjct 14221158 GTGGCGCGGATGCGGTGGATATTGA--GGCCGATACCGCCGGCCATCTTGGAGATCATGG 14221215
Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398
| || ||| | || || ||||| || || || || || ||| |||||| | || |
Sbjct 14221216 CACAGGTTTTGAGGGTGTCGTAGATACCATCGATGCTGTCGTCCTTCATGTCGACCAGGA 14221275
Query 54399 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 54458
| || |||| ||| | || || || || || | || ||||| ||||| |
Sbjct 14221276 AGCACGACGACAGCTGGGCCTGGGGCGTGCCGGCGTTGAAGAGAGTGGGAGAGGCGTGGG 14221335
Query 54459 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATAT------CCC 54512
| || | || || | || ||||||||||||| | || || | |||
Sbjct 14221336 TGAAGTACTTGCTCGACATGAGGTTGTACGTCTCGAGCACGCGCTCGATGTTGTCGCCCC 14221395
Query 54513 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 54572
| |||| || || ||||| ||||| | ||||||||| || | || |||||||||
Sbjct 14221396 A--GATG----CCGACAGCGACGCGCATGATCATGTGCTGGGGGCGCTCGACGATCTTGC 14221449
Query 54573 TGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 54621
|| | || |||| ||| || |||| || || || ||||| ||
Sbjct 14221450 CGTCGAGCTTGAGCAGGTACGAGCGCTCCAGGGTCTTGAAGCCAAAGTA 14221498
>seq12
Length=9596913
Score = 86.0 bits (94), Expect = 7e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 24149 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 24208
||| ||||||||||| | | || | |||||||| || || || || ||||| |||||
Sbjct 6218551 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTAAGGCCAGGCATCAGGCC 6218610
Query 24209 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 24268
||||| || ||||| || ||||| ||||| | || ||||| || || || || ||
Sbjct 6218611 GCGCTTCTTCAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGC 6218670
Query 24269 CGCAAAGGCAATAAG 24283
||||||||||| ||
Sbjct 6218671 GGCAAAGGCAATGAG 6218685
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593721006278400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |