Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1 104 3e-17 seq12 86.0 7e-12 >seq1 Length=15654088 Score = 104 bits (114), Expect = 3e-17 Identities = 414/649 (64%), Gaps = 16/649 (2%) Strand=Plus/Plus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 ||||| || || | || ||||| | || ||| || |||| | || || || ||||| Sbjct 14220858 CCAGGGCACTCGTTGGGGCACATGAGCGTCCAGTCGCCGTTCTTCTCAACCCGCTTCATG 14220917 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 || || || || ||||| || || | || || || | || | ||||| || || Sbjct 14220918 AATAGGTCTGGGATCCATAGGGCCAGGAAAAGGTCGCGGGCGCGGATCTCCTCCTTGCCG 14220977 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 ||||| || ||||||||| | | | || | |||||||| |||| || ||| Sbjct 14220978 TGGTTCTTGCGCAGGTCGAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAGATAGATG 14221037 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | || || || ||||| || ||||| || | ||| | || ||||| || || Sbjct 14221038 GCAAAGGCGCCGGGGCGCTTGTTGCCACCCTGGTCGACGTAACGGGCCGTGTTGTTGAAA 14221097 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 || | | ||| || | || || ||||||| || ||||| |||| ||| ||| || Sbjct 14221098 ACACGTAGCATGGGCACGATGCCGTTGGATGTGCCGTTGGTGCCGGCGATGTAGGAGCCC 14221157 Query 54281 CTGGCACGAATAT--TACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338 |||| || || | ||||| | || || || || ||||| || ||||| | | Sbjct 14221158 GTGGCGCGGATGCGGTGGATATTGA--GGCCGATACCGCCGGCCATCTTGGAGATCATGG 14221215 Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398 | || ||| | || || ||||| || || || || || ||| |||||| | || | Sbjct 14221216 CACAGGTTTTGAGGGTGTCGTAGATACCATCGATGCTGTCGTCCTTCATGTCGACCAGGA 14221275 Query 54399 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 54458 | || |||| ||| | || || || || || | || ||||| ||||| | Sbjct 14221276 AGCACGACGACAGCTGGGCCTGGGGCGTGCCGGCGTTGAAGAGAGTGGGAGAGGCGTGGG 14221335 Query 54459 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATAT------CCC 54512 | || | || || | || ||||||||||||| | || || | ||| Sbjct 14221336 TGAAGTACTTGCTCGACATGAGGTTGTACGTCTCGAGCACGCGCTCGATGTTGTCGCCCC 14221395 Query 54513 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 54572 | |||| || || ||||| ||||| | ||||||||| || | || ||||||||| Sbjct 14221396 A--GATG----CCGACAGCGACGCGCATGATCATGTGCTGGGGGCGCTCGACGATCTTGC 14221449 Query 54573 TGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 54621 || | || |||| ||| || |||| || || || ||||| || Sbjct 14221450 CGTCGAGCTTGAGCAGGTACGAGCGCTCCAGGGTCTTGAAGCCAAAGTA 14221498 >seq12 Length=9596913 Score = 86.0 bits (94), Expect = 7e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 24149 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 24208 ||| ||||||||||| | | || | |||||||| || || || || ||||| ||||| Sbjct 6218551 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTAAGGCCAGGCATCAGGCC 6218610 Query 24209 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 24268 ||||| || ||||| || ||||| ||||| | || ||||| || || || || || Sbjct 6218611 GCGCTTCTTCAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGC 6218670 Query 24269 CGCAAAGGCAATAAG 24283 ||||||||||| || Sbjct 6218671 GGCAAAGGCAATGAG 6218685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721006278400