Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017-
06-19] 80 sequences; 53,151,282 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq12 167 2e-36
seq23 147 2e-30
seq67 134 1e-26
seq1 96.9 4e-15
>seq12
Length=9596913
Score = 167 bits (184), Expect = 2e-36
Identities = 209/286 (73%), Gaps = 12/286 (4%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||| ||||| ||||||||||| | |||||| | ||| ||
Sbjct 6219157 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACAGCTGAGGAGATCGACTTG 6219098
Query 116696 TCCAAGGACACGAGCGACTGGGAGC----GCTTGAACGACAACGAGCGCCATTTCATCAA 116751
||||||||| ||||||| | |||| |||||| | ||| | ||||||
Sbjct 6219097 TCCAAGGACCTCCACGACTGGAACAACAAGCTT-AACGACGATGAGAAGTACTTCATCTC 6219039
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
|||| | || ||||| || ||| | ||||||||||||||||| ||||| |||||
Sbjct 6219038 GCACATCCTCGCCTTCTTTGCC-------ATGGCATCGTCAACGAGAACCTGGTGGAGCG 6218986
Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
||| ||||| ||||| | ||||| || |||||||| || ||||||||| ||
Sbjct 6218985 CTTCAGCGGCGAGGTCCAGGTCCCTGAGGCACGTTGCTTCTATGGGTTTCAGATCATGAT 6218926
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
||||||| | |||||||| | || ||| ||| |||||||| |||
Sbjct 6218925 GGAGAACATCCACTCGGAGACTTACTCGCTCCTGATCGACACCTAC 6218880
Score = 161 bits (178), Expect = 1e-34
Identities = 272/386 (70%), Gaps = 6/386 (2%)
Strand=Plus/Minus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-CCTTCGGCGAGCGC 117040
|||||||||| ||||| || ||||| ||| || ||| | || |||| | | |||
Sbjct 6218744 AGAAGGCCGACTGGGCTTTGAAGTGGATTTCCGACA-AGAAGTCGACCTTTGCCTCGCGG 6218686
Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100
|| | ||||| || ||||| ||||| ||||||| || || ||| |||| ||
Sbjct 6218685 CTCATTGCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTC 6218626
Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160
||||| ||||| |||||||| ||||| ||||| || ||| ||||||||||||||| |
Sbjct 6218625 TGGCTGAAGAAGCGCGGCCTGATGCCTGGCCTTACCTTCTCCAACGAGCTCATCTCTCGT 6218566
Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG 117220
|||||||||||||| ||||||||||| | || ||| || || | | || ||
Sbjct 6218565 GACGAGGGTCTGCACACGGACTTTGCCTGCCTTCTCTTCTCCCACATGAAGAACCGGCCC 6218506
Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280
||| | || ||||||| || ||| || ||| |||||||| |||||
Sbjct 6218505 AGCAAGCAAATGATCGAGGAGATCATCGTCGATGCTGTCAAGATCGAGCAAGAGTTCCTG 6218446
Query 117281 ACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACA 117338
||||| || ||||| ||||| ||||| || | || | |||| | ||| ||| ||||
Sbjct 6218445 ACCGAGGCCCTGCCTTGTGCG-CTGCTCGGCATGAACT-CGAACCTCATGAAGCAGTACA 6218388
Query 117339 TCGAGTTCGTCGCCGACAGGCTGCTG 117364
|||||||||| || ||| | || |||
Sbjct 6218387 TCGAGTTCGTGGCAGACCGCCTCCTG 6218362
>seq23
Length=7462253
Score = 147 bits (162), Expect = 2e-30
Identities = 172/231 (74%), Gaps = 1/231 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || ||||||||||| || |||||| | || || || | | |
Sbjct 7209772 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGC 7209831
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | ||||| || || | ||||| |||||||||||| | ||||||
Sbjct 7209832 GACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCC-CTGACCAG 7209890
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| ||||||||||||||||| || | ||||| || ||||||||||
Sbjct 7209891 CAGCGCCTGATCTTTGCGGGCAAACAGCTGGAGGATGGCCGCACGCTGTCCGACTACAAC 7209950
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920
|||||||||||| |||||| || |||||| |||| || | || || |||
Sbjct 7209951 ATCCAGAAGGAGAGCACGCTACACCTAGTGCTGCGTCTGCGTGGTGGTGGC 7210001
>seq67
Length=2709248
Score = 134 bits (148), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | || || ||||||||||| |||| |||||| | ||
Sbjct 458675 ATGCAGATCTTCGTGAAGACCTTGACTGGAAAAACCATCACGCTCGAAGTCGAATCATCC 458616
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | || |||| | ||| || || | || || ||||||||||| |||||||
Sbjct 458615 GATACGATTGATAACG-TAAAGAGCAAGATCCAGGATAAGGAGGGCATCCCTCCGGACCA 458557
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| ||||||||| |||||||| || | || ||| | ||||||||
Sbjct 458556 GCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGTACCTTGTCGGACTACAA 458497
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||| ||||||||| | || || || |||||| |||| || | |||||
Sbjct 458496 CATTCAGAAGGAGTCGACTCTCCACCTAGTGCTGCGTCTGCGTGGCGG 458449
Score = 127 bits (140), Expect = 2e-24
Identities = 152/204 (75%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || |||||||| ||||| |||||||| | || ||||| | |
Sbjct 458903 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACGCTGGAAGTCGAGTCATCA 458844
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| | ||| || |||| ||||| ||||| |||||| |||| ||
Sbjct 458843 GACACGATCGACAACG-TGAAGTCGAAGATTCAAGACAAGGAGGGTATCCCCCCGGATCA 458785
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| | |||| |||||||| |||||||| |||| ||||| || || |||||
Sbjct 458784 GCAACGTTTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACTCTGTCGGATTACAA 458725
Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892
||||||||||||| ||| || ||
Sbjct 458724 CATCCAGAAGGAGAGCACCCTCCA 458701
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| ||||| || |||||||| ||||||||| | || || || | |
Sbjct 459131 ATGCAGATTTTCGTCAAAACCCTGACGGGCAAGACCATCACCTTGGAGGTGGAGTCTTCG 459072
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||||| || |||| ||||| ||||| ||||| | ||||||
Sbjct 459071 GACACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAG 459012
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| ||| || || ||||| || |||| || || || ||||||||||
Sbjct 459011 CAGCGCCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGTCGGACTCTTTCCGACTACAAC 458952
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||| ||| || || || || | ||| | | |||||
Sbjct 458951 ATCCAGAAGGAGAGCACCCTCCACCTCGTCCTCCGCCTCCGTGGCGG 458905
Score = 116 bits (128), Expect = 4e-21
Identities = 139/186 (75%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772
|||||||| ||||||||| |||| || || | |||| | | | | |||| |||||
Sbjct 459335 ACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCGATACCATCGACAACG-TCAAGTC 459277
Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832
|| || | ||||| ||||| ||||| | |||||||| || ||||||| ||| |||||
Sbjct 459276 CAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGCCTCATCTTCGCTGGCAA 459217
Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
|| || || |||| || |||||| |||||||||||||| || ||| | ||||||||
Sbjct 459216 GCAACTCGAGGACGGCCGGACCCTCTCGGACTACAACATCCAAAAAGAGTCGACGCTGCA 459157
Query 40893 TCTAGT 40898
|| ||
Sbjct 459156 CCTCGT 459151
>seq1
Length=15654088
Score = 96.9 bits (106), Expect = 4e-15
Identities = 130/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || || ||||| |||||||| | || ||||| || | |||| |
Sbjct 11956502 TTCGTGAAGACCCTTACTGGCAAGACCATCACTCTGGAGGTCGAGTCCTCGGACACGATC 11956443
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | | ||| || || | ||||| ||||||||||| | |||||||| || |||
Sbjct 11956442 GACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTC 11956383
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|| | ||| ||||| ||||| || || | || || || |||||||||||||||||||
Sbjct 11956382 ATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGGACTCTGTCCGACTACAACATCCAGAAG 11956323
Query 40879 G 40879
|
Sbjct 11956322 G 11956322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515218684780800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |