Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq67 122 8e-23 seq1 107 2e-18 seq23 96.9 3e-15 >seq67 Length=2709248 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || |||||||| ||| | ||| || ||||||||||| || || ||| | Sbjct 458940 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCGAGCTGCTTCCCGGCGAA 458999 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 ||| || |||||||| |||||||| || ||||||||||| ||| || || || | Sbjct 459000 GATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGACTTGACATT 459059 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 |||| |||||||| ||| ||||| | ||| | || ||||| ||||| ||||| || Sbjct 459060 GTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTTTTGAC 459119 Query 118727 AAAAATCTGCAT 118738 ||||||||||| Sbjct 459120 GAAAATCTGCAT 459131 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| || ||| || || ||||||||||| || |||||| ||||| Sbjct 458694 CACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAGAGTGCGACCGTCCTC 458753 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || || |||| | ||| |||||||| || || || |||||||||||| Sbjct 458754 CAGCTGCTTGCCCGCAAAGATCAAACGTTGCTGATCCGGGGGGATACCCTCCTTGTCTTG 458813 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| ||||| | |||||| || | || | || || Sbjct 458814 AATCTTCGACTTCACGTTGTCGATCGTGTCTGATGACTCGACTTCCAGCGTGATGGTCTT 458873 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || || || || || |||||||| Sbjct 458874 GCCGGTGAGCGTCTTGACGAAGATCTGCAT 458903 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||| | ||||| || ||||| || ||||||||||| || || || || ||| Sbjct 458463 CAGCACTAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCCGACAAGGTACGGCCATC 458522 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT- 118644 ||| ||||| || || ||| |||| || |||||||| || ||||| ||||||||||| | Sbjct 458523 CTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTATC 458582 Query 118645 CTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACC 118703 ||| | || | ||| || | || | || || | || | ||||| |||| || | Sbjct 458583 CTGGATCTTGCTCTTT-ACGTTATCAATCGTATCGGATGAT-TCGACTTCGAGCGTGATG 458640 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || |||| || || || || ||||||||| Sbjct 458641 GTTTTTCCAGTCAAGGTCTTCACGAAGATCTGCATG 458676 Score = 95.1 bits (104), Expect = 1e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||||||||| |||||||| || | || || |||||||| || || ||| Sbjct 459163 GTCGACTCTTTTTGGATGTTGTAGTCCGAGAGGGTCCGGCCGTCCTCGAGTTGCTTGCCA 459222 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| ||||||| |||||||| |||||||| || ||||||||||| || || || Sbjct 459223 GCGAAGATGAGGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGACTTG 459282 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCA 118716 || | |||| ||| || | ||| ||||||| ||| | || ||||| |||| Sbjct 459283 ACGTTGTCGATGGTATCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCA 459337 >seq1 Length=15654088 Score = 107 bits (118), Expect = 2e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| || ||| || |||||| ||||| || |||||| | ||| Sbjct 11956324 TTCTGGATGTTGTAGTCGGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATG 11956383 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 ||||||||||| |||||||| |||||||||||||| || || || || | ||| Sbjct 11956384 AGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCG 11956443 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729 | ||||||| | ||||||||| | || | || ||||| || || || || || || Sbjct 11956444 ATCGTGTCCGAGGACTCGACCTCCAGAGTGATGGTCTTGCCAGTAAGGGTCTTCACGAA 11956502 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133222 GGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACG 133281 ||||||| || || |||||||||||||| ||||| | | || | || |||||| | | Sbjct 14220014 GGTTGACGACCTGGAACTCGCCGGCGAGCACGCGACGCTGGTAGATGTTGGACGTGTAGG 14220073 Query 133282 GTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCA 133341 | ||||| | ||||||||||| || ||||||| ||| | || ||||||||| ||||| Sbjct 14220074 GCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGCTGGCGGTGGGCATGGGCGCCA 14220133 Query 133342 CCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGT 133377 | | || ||||| | || |||| || || |||| Sbjct 14220134 CAAGCAGCGAGTTGCGCACACCGTGCTGCTTGATGT 14220169 >seq23 Length=7462253 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/193 (72%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || |||||||| ||| || ||||| |||||| |||||||| || || | Sbjct 7209962 CTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAA 7209903 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 ||| || |||||||| || || || |||||||||||||| || || || || | Sbjct 7209902 GATCAGGCGCTGCTGGTCAGGGGG-ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 7209844 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 |||| ||||| | ||| ||||| | ||| | || ||||| || || || || || Sbjct 7209843 GTCGATCGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCAC 7209784 Query 118727 AAAAATCTGCATG 118739 ||| ||||||||| Sbjct 7209783 AAAGATCTGCATG 7209771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829977015360