Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq23 125 8e-24 seq67 111 2e-19 seq1 104 3e-17 >seq23 Length=7462253 Score = 125 bits (138), Expect = 8e-24 Identities = 158/216 (73%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||| | || | ||||||||||| || || ||||| || | ||| || || | Sbjct 7209986 ACGCAGCACTAGGTGTAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGGCC 7209927 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || ||||| || || || || || || ||||||||||| | || | || |||||| Sbjct 7209926 ATCCTCCAGCTGTTTGCCCGCAAAGATCAGGCGCTGCTGGTCAGGGGG-ATGCCCTCCTT 7209868 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || |||| | | | |||||||||||| ||||| || | ||||| Sbjct 7209867 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGCTCGACTCCACCTCAAGGGTGAT 7209808 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||||||| || ||||| |||||||| ||||| Sbjct 7209807 AGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 7209772 >seq67 Length=2709248 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| || || ||||| || | |||||||| |||| || |||||||| || Sbjct 458935 GTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCGAGCTGCTTCCCG 458994 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTT 43105 ||||| || || ||||||||||||| || | | |||||||||| ||| | || | || Sbjct 458995 GCGAAGATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCC-TGAATCTTCGACTT 459053 Query 43106 GAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165 || | | | ||||| || ||||| || | |||||||| |||||||| || || Sbjct 459054 GACATTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTGCCCGTCAGGGT 459113 Query 43166 CTTTACAAAGATTTGCAT 43183 || || || || ||||| Sbjct 459114 TTTGACGAAAATCTGCAT 459131 Score = 109 bits (120), Expect = 6e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| || | ||||||||||| || || |||||||| | |||||| || | Sbjct 458688 ACGAAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAGAGTGCGACC 458747 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || || || || | || ||||| || | || | | |||||| Sbjct 458748 GTCCTCCAGCTGCTTGCCCGCAAAGATCAAACGTTGCTGATCCGGGGGGATACCCTCCTT 458807 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 || | ||| | || | | ||| | | | |||||| || || || || | ||||| Sbjct 458808 GT-CTTGAATCTTCGACTTCACGTTGTCGATCGTGTCTGATGACTCGACTTCCAGCGTGA 458866 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||| || |||||||| || ||||| ||||| Sbjct 458867 TGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 458903 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42954 TGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCA 43013 ||||| || | | ||||| ||| | || | || |||||| ||||| ||||| || Sbjct 458446 TGTCCGCCACGCAGACGCAGCACTAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCC 458505 Query 43014 GCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCC 43073 | || || || | || || |||||||| || ||||| || || ||||||||||| | Sbjct 458506 GACAAGGTACGGCCATCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGA 458565 Query 43074 GGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCC 43133 || | || |||||| ||| ||| || || | | | | ||| ||| ||||| Sbjct 458566 GGGATGCCCTCCTTATCCTGGATCTTGCTCTTTACGTTATCAATCGTATCGGATGATTCG 458625 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||| |||||||||||| || || | ||||| || ||||| ||||| Sbjct 458626 ACTTCGAGCGTGATGGTTTTTCCAGTCAAGGTCTTCACGAAGATCTGCAT 458675 Score = 100 bits (110), Expect = 3e-16 Identities = 125/169 (74%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| ||||| || ||||| || | || ||||| |||| || || ||||| |||||||| Sbjct 459168 CTCTTTTTGGATGTTGTAGTCCGAGAGGGTCCGGCCGTCCTCGAGTTGCTTGCCAGCGAA 459227 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||||| || | | |||||||||| ||| || |||| ||| Sbjct 459228 GATGAGGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 459286 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 | | | || ||| || ||||| |||| |||||||| |||||||| Sbjct 459287 TGTCGATGGTATCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGT 459335 >seq1 Length=15654088 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || | ||||||||| | || || |||||||| |||||||| | Sbjct 11956322 CCTTCTGGATGTTGTAGTCGGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCGAAAA 11956381 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 |||| ||||||||||||| || | || |||||||||| ||| || || | | Sbjct 11956382 TGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGT 11956441 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | |||||| || || || || | |||||||| ||||| || || ||||| || | Sbjct 11956442 CGATCGTGTCCGAGGACTCGACCTCCAGAGTGATGGTCTTGCCAGTAAGGGTCTTCACGA 11956501 Query 43174 AG 43175 || Sbjct 11956502 AG 11956503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817028182400