Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq23 158 8e-34 seq67 145 5e-30 seq1 123 2e-23 >seq23 Length=7462253 Score = 158 bits (174), Expect = 8e-34 Identities = 172/227 (76%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||| ||||||| || || || ||||| ||||||||||||||| Sbjct 7209997 CCACCACGCAGACGCAGCACTAGGTGTAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 7209938 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || |||| ||| ||||| || || || || ||||||||||| | ||| Sbjct 7209937 AGCGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAGATCAGGCGCTGCTGGTC-AGGGGG 7209879 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | | |||| ||| |||| || || Sbjct 7209878 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGCTCGACTCCACC 7209819 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || ||||| ||||| || ||||||||||||||||| Sbjct 7209818 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 7209772 >seq67 Length=2709248 Score = 145 bits (160), Expect = 5e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 |||||| ||||| | |||||| ||||| | ||| || ||||| ||||||||||| || Sbjct 458448 TCCGCCACGCAGACGCAGCACTAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCCGA 458507 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || |||| | || |||| ||||||||| ||||| || || ||||||||||| || Sbjct 458508 CAAGGTACGGCCATCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGAGG 458567 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||| || ||||| ||||| | | |||| ||||| |||||||| Sbjct 458568 GATGCCCTCCTTATCCTGGATCTTGCTCTTTACGTTATCAATCGTATCGGATGATTCGAC 458627 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||||||| || || | || ||||| ||||||||||| Sbjct 458628 TTCGAGCGTGATGGTTTTTCCAGTCAAGGTCTTCACGAAGATCTGCAT 458675 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||||||| ||| | || || || ||||| |||||||| || ||| Sbjct 458677 CCACCGCGCAGACGAAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAC 458736 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| |||| ||||||||| || || || | || ||||| || ||| Sbjct 458737 AGAGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAAACGTTGCTGATCCGGGGGG 458796 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | |||| || | || ||||| Sbjct 458797 ATACCCTCCTTGTCTTGAATCTTCGACTTCACGTTGTCGATCGTGTCTGATGACTCGACT 458856 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||||||| ||||||||||| || || || ||||||||||| Sbjct 458857 TCCAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 458903 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || || ||||| | || || || ||||| |||||||||||||| Sbjct 458905 CCGCCACGGAGGCGGAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAA 458964 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | |||||| || ||||| || || |||||||||||| || Sbjct 458965 AGAGTCCGACCGTCCTCGAGCTGCTTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGG 459024 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | | || | || | || || || Sbjct 459025 ATACCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTGTCCGAAGACTCCACC 459084 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || || ||||| || || |||||||| Sbjct 459085 TCCAAGGTGATGGTCTTGCCCGTCAGGGTTTTGACGAAAATCTGCAT 459131 Score = 86.0 bits (94), Expect = 4e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 ||||| || ||||||||||| || || ||| |||| || | |||||||| ||||| Sbjct 459169 TCTTTTTGGATGTTGTAGTCCGAGAGGGTCCGGCCGTCCTCGAGTTGCTTGCCAGCGAAG 459228 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| |||||||||||| || | | ||||||||| ||||| ||| | | | Sbjct 459229 ATGAGGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 459288 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGT 34365 | || | ||||| || || || || | |||||||| ||||| || Sbjct 459289 TCGATGGTATCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGT 459335 >seq1 Length=15654088 Score = 123 bits (136), Expect = 2e-23 Identities = 142/190 (75%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| ||||||||||||||||| ||| | || || | ||||||||| ||||||||| Sbjct 11956324 TTCTGGATGTTGTAGTCGGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATG 11956383 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 || |||||||||||| || | || ||||||||| ||||| ||| | || | | Sbjct 11956384 AGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCG 11956443 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381 |||| || | || ||||| |||| |||||||| ||||| || || || ||||| ||| Sbjct 11956444 ATCGTGTCCGAGGACTCGACCTCCAGAGTGATGGTCTTGCCAGTAAGGGTCTTCACGAAG 11956503 Query 34382 ATCTGCATCG 34391 | || |||| Sbjct 11956504 CTGTG-ATCG 11956512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071685004800