Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017-
06-19] 80 sequences; 53,151,282 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq23 158 8e-34
seq67 145 5e-30
seq1 123 2e-23
>seq23
Length=7462253
Score = 158 bits (174), Expect = 8e-34
Identities = 172/227 (76%), Gaps = 1/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | |||||| ||||||| || || || ||||| |||||||||||||||
Sbjct 7209997 CCACCACGCAGACGCAGCACTAGGTGTAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 7209938
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
||| ||| | || |||| ||| ||||| || || || || ||||||||||| | |||
Sbjct 7209937 AGCGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAGATCAGGCGCTGCTGGTC-AGGGGG 7209879
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||||||| ||||| ||| | || | | |||| ||| |||| || ||
Sbjct 7209878 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGCTCGACTCCACC 7209819
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | ||||| || ||||| ||||| || |||||||||||||||||
Sbjct 7209818 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 7209772
>seq67
Length=2709248
Score = 145 bits (160), Expect = 5e-30
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
|||||| ||||| | |||||| ||||| | ||| || ||||| ||||||||||| ||
Sbjct 458448 TCCGCCACGCAGACGCAGCACTAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCCGA 458507
Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
|| |||| | || |||| ||||||||| ||||| || || ||||||||||| ||
Sbjct 458508 CAAGGTACGGCCATCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGAGG 458567
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| || |||||| || ||||| ||||| | | |||| ||||| ||||||||
Sbjct 458568 GATGCCCTCCTTATCCTGGATCTTGCTCTTTACGTTATCAATCGTATCGGATGATTCGAC 458627
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | |||||||||||| || || | || ||||| |||||||||||
Sbjct 458628 TTCGAGCGTGATGGTTTTTCCAGTCAAGGTCTTCACGAAGATCTGCAT 458675
Score = 125 bits (138), Expect = 5e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| |||||||| | ||||||| ||| | || || || ||||| |||||||| || |||
Sbjct 458677 CCACCGCGCAGACGAAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAC 458736
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || |||| |||| ||||||||| || || || | || ||||| || |||
Sbjct 458737 AGAGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAAACGTTGCTGATCCGGGGGG 458796
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||||||| ||||| ||| | | | | |||| || | || |||||
Sbjct 458797 ATACCCTCCTTGTCTTGAATCTTCGACTTCACGTTGTCGATCGTGTCTGATGACTCGACT 458856
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| ||||||||| ||||||||||| || || || |||||||||||
Sbjct 458857 TCCAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 458903
Score = 113 bits (124), Expect = 3e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||| || || | || || ||||| | || || || ||||| ||||||||||||||
Sbjct 458905 CCGCCACGGAGGCGGAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAA 458964
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || |||| || | |||||| || ||||| || || |||||||||||| ||
Sbjct 458965 AGAGTCCGACCGTCCTCGAGCTGCTTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGG 459024
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||||||| ||||| ||| | || | | || | || | || || ||
Sbjct 459025 ATACCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTGTCCGAAGACTCCACC 459084
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| |||||||| ||||| || || ||||| || || ||||||||
Sbjct 459085 TCCAAGGTGATGGTCTTGCCCGTCAGGGTTTTGACGAAAATCTGCAT 459131
Score = 86.0 bits (94), Expect = 4e-12
Identities = 119/167 (71%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
||||| || ||||||||||| || || ||| |||| || | |||||||| |||||
Sbjct 459169 TCTTTTTGGATGTTGTAGTCCGAGAGGGTCCGGCCGTCCTCGAGTTGCTTGCCAGCGAAG 459228
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318
||||| |||||||||||| || | | ||||||||| ||||| ||| | | |
Sbjct 459229 ATGAGGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 459288
Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGT 34365
| || | ||||| || || || || | |||||||| ||||| ||
Sbjct 459289 TCGATGGTATCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGT 459335
>seq1
Length=15654088
Score = 123 bits (136), Expect = 2e-23
Identities = 142/190 (75%), Gaps = 1/190 (1%)
Strand=Plus/Plus
Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261
||||| ||||||||||||||||| ||| | || || | ||||||||| |||||||||
Sbjct 11956324 TTCTGGATGTTGTAGTCGGACAGAGTCCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATG 11956383
Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321
|| |||||||||||| || | || ||||||||| ||||| ||| | || | |
Sbjct 11956384 AGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCG 11956443
Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381
|||| || | || ||||| |||| |||||||| ||||| || || || ||||| |||
Sbjct 11956444 ATCGTGTCCGAGGACTCGACCTCCAGAGTGATGGTCTTGCCAGTAAGGGTCTTCACGAAG 11956503
Query 34382 ATCTGCATCG 34391
| || ||||
Sbjct 11956504 CTGTG-ATCG 11956512
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323071685004800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |