Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1 161 2e-34 seq23 102 2e-16 seq45 89.7 1e-12 seq12 84.2 5e-11 >seq1 Length=15654088 Score = 161 bits (178), Expect = 2e-34 Identities = 411/620 (66%), Gaps = 13/620 (2%) Strand=Plus/Minus Query 248826 CTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGA 248885 ||||| ||||| || |||||| ||||| || ||||| | || ||||||||||| || Sbjct 14221496 CTTTGGCTTCAAGACCCTGGAGCGCTCGTACCTGCTCAAGCTCGACGGCAAGATCGTCGA 14221437 Query 248886 ACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAG 248945 || ||||||||| | ||||| || |||||||| || || |||| ||| | Sbjct 14221436 GCGCCCCCAGCACATGATCATGCGCGTCGCTGTCGGCATCTGGGGCGACAACATCGAGCG 14221377 Query 248946 CGTGCTCGAGACGTACACCGGAATG-AGTGAACGCTGGATGACACATGCCACACCGACGC 249004 ||||||||||||||||| | ||| | | | | | | || || ||| | || || | Sbjct 14221376 CGTGCTCGAGACGTACAACCTCATGTCGAGCAAG-TACTTCACCCACGCCTCTCCCACTC 14221318 Query 249005 TCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAG 249064 ||||||||||||| || | | |||||| |||||||| || | | |||| | | Sbjct 14221317 TCTTCAACGCCGGCACGCCCCAGGCCCAGCTGTCGTCGTGCTTCCTGGTCGACATGAAGG 14221258 Query 249065 ACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAATTCG 249124 ||||| |||| || || || ||||| || ||| || | ||| || || | | Sbjct 14221257 ACGACAGCATCGATGGTATCTACGACACCCTCAAAACCTGTGCCATGATCTCCAAGATGG 14221198 Query 249125 CGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTA 249184 | ||||| ||||| ||| || | |||||| || | ||| || |||||| || | Sbjct 14221197 CCGGCGGTATCGGCCTCAATATCCACCGCATCCGCGCCACGGGCTCCTACATCGCCGGCA 14221138 Query 249185 CAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTT-GAGTCCACCGCCAGG 249243 | || || | || ||||| ||| | || || || ||| | ||| ||| | Sbjct 14221137 CCAACGGCACATCCAACGGCATCGTGCCCATGCTACG-TGTTTTCAACAACACGGCCCGT 14221079 Query 249244 TTCATCAACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTG 249297 | | || |||||| || ||||| || | || ||||| ||| |||| | Sbjct 14221078 TACGTCGACCAGGGTGGCAACAAGCGCC---CCGGCGCCTTTGCCATCTATCTGGAGCCG 14221022 Query 249298 TGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATG 249357 ||||||||||| | || |||||||| ||| || |||||| ||||||| ||| || Sbjct 14221021 TGGCACGCCGACGTGTTCGAGTTCCTCGACCTGCGCAAGAACCACGGCAAGGAGGAGATC 14220962 Query 249358 AGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAG 249417 | || || ||||| ||| | ||| ||| || | ||| | |||||| || || || Sbjct 14220961 CGCGCCCGCGACCTTTTCCTGGCCCTATGGATCCCAGACCTATTCATGAAGCGGGTTGAG 14220902 Query 249418 GCCGACGGCGATTGGACGCT 249437 ||||||| |||||||| Sbjct 14220901 AAGAACGGCGACTGGACGCT 14220882 Score = 86.0 bits (94), Expect = 1e-11 Identities = 154/224 (69%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 248461 TTCGACAAAATCTCGGCGCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTC 248520 |||||||| ||| |||| || || || | || || || || || | ||| ||| Sbjct 14221888 TTCGACAAGATCACGGCCCGTGTCTCGAGATTGTGCTACGGCCTCGACCTGAACCATGTC 14221829 Query 248521 GATCATGTGGCCATCGCCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACA 248580 || | || ||| ||||||| || || |||||||||||| ||| || || |||| Sbjct 14221828 GACCCCGTCAAGATCACCCAGAAGGTCATCTCGGGCGTCTACGGCGGTGTCAC---GACA 14221772 Query 248581 G---AACTGGACACCTTAGCTGCGGAGACGGCGGCGTACATGGCGATTGCACACCCCGAC 248637 | | |||||| | | || || || ||||| ||||||||| | | | ||||||||| Sbjct 14221771 GTGCAGCTGGACGACCTGGCCGCCGAAACGGCCGCGTACATGACCGTCACTCACCCCGAC 14221712 Query 248638 TACTCGCTGCTGGCCGGGAGGATCGCCGTCTCAAGGCTTCACAA 248681 ||| | | ||||||| | | || ||||| || | || ||||| Sbjct 14221711 TACGCCATCCTGGCCGCGCGCATTGCCGTGTCCAACCTGCACAA 14221668 >seq23 Length=7462253 Score = 102 bits (112), Expect = 2e-16 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 254017 TCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAACCCTGT 254076 || |||| || || || || |||||||| || ||||||||||| |||||||| | | | Sbjct 866487 TCTACGGGCCCCCGGGCACGGGCAAGACCTCGACCATCCTGGCCCTGGCCCGGCGCATCT 866546 Query 254077 TGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGT 254136 |||| | |||||||| || || || ||||||||||| || ||||| || || Sbjct 866547 ACGGCGCCGACAACATGAGGCAGATGGTCCTGGAGCTGAACGCCTCGGACGACCGTGGCA 866606 Query 254137 TGGACGTCGTCCGCGACAAGATCAAGACTTT 254167 | |||||||| ||||| |||||||||| || Sbjct 866607 TCGACGTCGTGCGCGAGCAGATCAAGACCTT 866637 >seq45 Length=5506958 Score = 89.7 bits (98), Expect = 1e-12 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 254202 TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAG 254261 || ||||| |||||| || | ||||| || ||||| ||| ||||||| || || ||| Sbjct 4249658 TGCCCGCCCTTCAAGATCATCATCCTCGATGAGGCCGACTCCATGACCCAGGATGCTCAG 4249599 Query 254262 TCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGC 254321 |||||| ||||| || |||||||| | | | || || || ||||| | ||| Sbjct 4249598 AGCGCCCTGCGCCGTACCATGGAGACCTATAGCAAAATCACCCGCTTCTGCCTCATCTGC 4249539 Query 254322 AACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCAGC 254381 |||||||| | ||||||| ||| ||||| || || ||| |||||| | |||| Sbjct 4249538 AACTACGTCACCCGTATCATCGACCCACTGGCCTCCCGTTGCAGCAAGTTCAGGTTCAAG 4249479 Query 254382 ACCCTCG 254388 | ||||| Sbjct 4249478 AGCCTCG 4249472 >seq12 Length=9596913 Score = 84.2 bits (92), Expect = 5e-11 Identities = 114/158 (72%), Gaps = 6/158 (4%) Strand=Plus/Plus Query 254213 CAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCG 254272 ||||||||||||||||||||||||||||| ||||||| | | |||||| || || || Sbjct 8500748 CAAGCTCGTGATCCTGGACGAGGCGGACAGCATGACGTCGGGGGCGCAGCAGGCGCTGCG 8500807 Query 254273 CCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTC 254332 || || ||||||| ||||| |||||| || | | ||||||| | ||| Sbjct 8500808 GCGGACCATGGAGATCTACTCCAACACGACGCGCTTCGCGTTCGCGTGCAACCA---GTC 8500864 Query 254333 ---GAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCA 254367 |||||||||| |||||| || || ||||||| Sbjct 8500865 CAACAAGATCATCGAGCCGCTGCAGTCGCGCTGCGCCA 8500902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073765299389440