Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017-
06-19] 80 sequences; 53,151,282 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq1 161 2e-34
seq23 102 2e-16
seq45 89.7 1e-12
seq12 84.2 5e-11
>seq1
Length=15654088
Score = 161 bits (178), Expect = 2e-34
Identities = 411/620 (66%), Gaps = 13/620 (2%)
Strand=Plus/Minus
Query 248826 CTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGA 248885
||||| ||||| || |||||| ||||| || ||||| | || ||||||||||| ||
Sbjct 14221496 CTTTGGCTTCAAGACCCTGGAGCGCTCGTACCTGCTCAAGCTCGACGGCAAGATCGTCGA 14221437
Query 248886 ACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAG 248945
|| ||||||||| | ||||| || |||||||| || || |||| ||| |
Sbjct 14221436 GCGCCCCCAGCACATGATCATGCGCGTCGCTGTCGGCATCTGGGGCGACAACATCGAGCG 14221377
Query 248946 CGTGCTCGAGACGTACACCGGAATG-AGTGAACGCTGGATGACACATGCCACACCGACGC 249004
||||||||||||||||| | ||| | | | | | | || || ||| | || || |
Sbjct 14221376 CGTGCTCGAGACGTACAACCTCATGTCGAGCAAG-TACTTCACCCACGCCTCTCCCACTC 14221318
Query 249005 TCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAG 249064
||||||||||||| || | | |||||| |||||||| || | | |||| | |
Sbjct 14221317 TCTTCAACGCCGGCACGCCCCAGGCCCAGCTGTCGTCGTGCTTCCTGGTCGACATGAAGG 14221258
Query 249065 ACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAATTCG 249124
||||| |||| || || || ||||| || ||| || | ||| || || | |
Sbjct 14221257 ACGACAGCATCGATGGTATCTACGACACCCTCAAAACCTGTGCCATGATCTCCAAGATGG 14221198
Query 249125 CGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTA 249184
| ||||| ||||| ||| || | |||||| || | ||| || |||||| || |
Sbjct 14221197 CCGGCGGTATCGGCCTCAATATCCACCGCATCCGCGCCACGGGCTCCTACATCGCCGGCA 14221138
Query 249185 CAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTT-GAGTCCACCGCCAGG 249243
| || || | || ||||| ||| | || || || ||| | ||| ||| |
Sbjct 14221137 CCAACGGCACATCCAACGGCATCGTGCCCATGCTACG-TGTTTTCAACAACACGGCCCGT 14221079
Query 249244 TTCATCAACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTG 249297
| | || |||||| || ||||| || | || ||||| ||| |||| |
Sbjct 14221078 TACGTCGACCAGGGTGGCAACAAGCGCC---CCGGCGCCTTTGCCATCTATCTGGAGCCG 14221022
Query 249298 TGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATG 249357
||||||||||| | || |||||||| ||| || |||||| ||||||| ||| ||
Sbjct 14221021 TGGCACGCCGACGTGTTCGAGTTCCTCGACCTGCGCAAGAACCACGGCAAGGAGGAGATC 14220962
Query 249358 AGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAG 249417
| || || ||||| ||| | ||| ||| || | ||| | |||||| || || ||
Sbjct 14220961 CGCGCCCGCGACCTTTTCCTGGCCCTATGGATCCCAGACCTATTCATGAAGCGGGTTGAG 14220902
Query 249418 GCCGACGGCGATTGGACGCT 249437
||||||| ||||||||
Sbjct 14220901 AAGAACGGCGACTGGACGCT 14220882
Score = 86.0 bits (94), Expect = 1e-11
Identities = 154/224 (69%), Gaps = 6/224 (3%)
Strand=Plus/Minus
Query 248461 TTCGACAAAATCTCGGCGCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTC 248520
|||||||| ||| |||| || || || | || || || || || | ||| |||
Sbjct 14221888 TTCGACAAGATCACGGCCCGTGTCTCGAGATTGTGCTACGGCCTCGACCTGAACCATGTC 14221829
Query 248521 GATCATGTGGCCATCGCCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACA 248580
|| | || ||| ||||||| || || |||||||||||| ||| || || ||||
Sbjct 14221828 GACCCCGTCAAGATCACCCAGAAGGTCATCTCGGGCGTCTACGGCGGTGTCAC---GACA 14221772
Query 248581 G---AACTGGACACCTTAGCTGCGGAGACGGCGGCGTACATGGCGATTGCACACCCCGAC 248637
| | |||||| | | || || || ||||| ||||||||| | | | |||||||||
Sbjct 14221771 GTGCAGCTGGACGACCTGGCCGCCGAAACGGCCGCGTACATGACCGTCACTCACCCCGAC 14221712
Query 248638 TACTCGCTGCTGGCCGGGAGGATCGCCGTCTCAAGGCTTCACAA 248681
||| | | ||||||| | | || ||||| || | || |||||
Sbjct 14221711 TACGCCATCCTGGCCGCGCGCATTGCCGTGTCCAACCTGCACAA 14221668
>seq23
Length=7462253
Score = 102 bits (112), Expect = 2e-16
Identities = 113/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 254017 TCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAACCCTGT 254076
|| |||| || || || || |||||||| || ||||||||||| |||||||| | | |
Sbjct 866487 TCTACGGGCCCCCGGGCACGGGCAAGACCTCGACCATCCTGGCCCTGGCCCGGCGCATCT 866546
Query 254077 TGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGT 254136
|||| | |||||||| || || || ||||||||||| || ||||| || ||
Sbjct 866547 ACGGCGCCGACAACATGAGGCAGATGGTCCTGGAGCTGAACGCCTCGGACGACCGTGGCA 866606
Query 254137 TGGACGTCGTCCGCGACAAGATCAAGACTTT 254167
| |||||||| ||||| |||||||||| ||
Sbjct 866607 TCGACGTCGTGCGCGAGCAGATCAAGACCTT 866637
>seq45
Length=5506958
Score = 89.7 bits (98), Expect = 1e-12
Identities = 132/187 (71%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 254202 TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAG 254261
|| ||||| |||||| || | ||||| || ||||| ||| ||||||| || || |||
Sbjct 4249658 TGCCCGCCCTTCAAGATCATCATCCTCGATGAGGCCGACTCCATGACCCAGGATGCTCAG 4249599
Query 254262 TCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGC 254321
|||||| ||||| || |||||||| | | | || || || ||||| | |||
Sbjct 4249598 AGCGCCCTGCGCCGTACCATGGAGACCTATAGCAAAATCACCCGCTTCTGCCTCATCTGC 4249539
Query 254322 AACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCAGC 254381
|||||||| | ||||||| ||| ||||| || || ||| |||||| | ||||
Sbjct 4249538 AACTACGTCACCCGTATCATCGACCCACTGGCCTCCCGTTGCAGCAAGTTCAGGTTCAAG 4249479
Query 254382 ACCCTCG 254388
| |||||
Sbjct 4249478 AGCCTCG 4249472
>seq12
Length=9596913
Score = 84.2 bits (92), Expect = 5e-11
Identities = 114/158 (72%), Gaps = 6/158 (4%)
Strand=Plus/Plus
Query 254213 CAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCG 254272
||||||||||||||||||||||||||||| ||||||| | | |||||| || || ||
Sbjct 8500748 CAAGCTCGTGATCCTGGACGAGGCGGACAGCATGACGTCGGGGGCGCAGCAGGCGCTGCG 8500807
Query 254273 CCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTC 254332
|| || ||||||| ||||| |||||| || | | ||||||| | |||
Sbjct 8500808 GCGGACCATGGAGATCTACTCCAACACGACGCGCTTCGCGTTCGCGTGCAACCA---GTC 8500864
Query 254333 ---GAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCA 254367
|||||||||| |||||| || || |||||||
Sbjct 8500865 CAACAAGATCATCGAGCCGCTGCAGTCGCGCTGCGCCA 8500902
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073765299389440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |