Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 509 1e-139 seq12 127 2e-24 seq67 95.1 1e-14 seq23 82.4 7e-11 >seq1 Length=15654088 Score = 509 bits (564), Expect = 1e-139 Identities = 1259/1891 (67%), Gaps = 45/1891 (2%) Strand=Plus/Plus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 || ||| || || ||||| || | | ||||| | || |||||| || || |||||||| Sbjct 14219667 CTGGTCGACGGTGAACTGGATAGGCTGGGCGGCAGCTTGGGTGCGCAGGTAGTACATGCC 14219726 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 |||||| || || | |||||| || || || || ||||| | || || | || Sbjct 14219727 CGTCTTGAGGCCTAGCTTCCAGCCGGCGAAGTGCATAGACGTTATCTTGCCCATGGTGGG 14219786 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | | ||||| | |||| |||||| || ||||| || || || || || || || Sbjct 14219787 CTCGCGCATGTGGATGTTGAGCGACTGCGATTGGTCGATGAAGGCGCCGCGGTCAGCCGC 14219846 Query 22285 CATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTC 22344 ||| | | | || ||| ||| || ||||| || ||||||||||| || || | || Sbjct 14219847 CATCTGGACGACGGTGCGCTGCGAGATCTCCCAGACCGTCTTGTACAGGCGCTTGGTATC 14219906 Query 22345 TAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAAT 22404 || || |||| |||||| ||| ||| | | ||||| || || || Sbjct 14219907 CTCGGGGATGCTGGCGATGTTCTGGATGGAGCCGCCCTCGGCGATGATGCGGTTCTTCAT 14219966 Query 22405 CGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAG--ATGACGGTTCACCACT 22462 | ||| |||||| || | || || || || | || ||| |||| || || Sbjct 14219967 GTTGTCGGACCACAAGCCAAGCTCGACCAGGTCCTTCAGGAGCCATG--GGTTGACGACC 14220024 Query 22463 TGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGAT 22522 || |||||||||| | ||||| || ||||| |||||||| ||| | || ||||| | Sbjct 14220025 TGGAACTCGCCGGCGAGCACGCGACGCTGGTAGATGTTGGACGTGTAGGGCTCGAAGCAC 14220084 Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAG 22582 || ||||| ||||| ||||| | || ||||| ||||| ||||||| || |||||| Sbjct 14220085 TCGTTGTTGCCCAGAATCTGCGACGTGCTGGCGGTGGGCATGGGCGCCACAAGCAGCGAG 14220144 Query 22583 TTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGG 22640 || | || ||||||| |||| | | ||||||| | ||||||||| || || | Sbjct 14220145 TTGCGCACACCGTGCTGCTTGA--TGTCCGCCTTGAGCGACTCCCAGTCCCAGAGCTCCG 14220202 Query 22641 ACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC--GCGACTCGCCGGGCTGCC 22698 ||||| | || || |||||| ||||| |||| | ||| ||||| | || ||| Sbjct 14220203 ACGGCTTGACGTT---CCACATGTCGTACTGCAGGATGCCCTGCGACACA--GGCGAGCC 14220257 Query 22699 TTCGTACGTTTCGTACGGACCATATATCGCG-GCAAGTTCGCAGCTCGCCTCCAACGCGC 22757 ||||| || ||| | || | ||||| || || ||||| || || ||| Sbjct 14220258 CTCGTATGTCGAGTAGGTGCCCTGC-TCGCGCGCCAGCTCGCACGAGGCGGTCAGGGCGG 14220316 Query 22758 CGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCG---GCGGCGGCGACGCTTTCGT 22814 ||| || || ||||| ||||| | |||||| | ||| || ||| || || || Sbjct 14220317 CGTGGTAGATGGTCTCAAAGATCTGCTTGTTGAGCTCGCGAGCCTCGG-GAGACT--CGA 14220373 Query 22815 ACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTC 22874 | |||| |||| | | ||| || || |||| |||||| ||||||| ||||| || | Sbjct 14220374 AGGGCAGGCGCAGCGCTAGGAAGGCATCGGCCAGACCCTGCACGCCTAGGCCGATGGGCC 14220433 Query 22875 GGTTTTTCAGATTCGACACTTTT----GCCTCGGGCAAAGGATACCAATTCGAATCGATT 22930 ||| ||| || || || ||||| | | || || | || ||||| Sbjct 14220434 GGTGGCGCAGGTTG----CTGTTACGAGCCTCCTGGACCGGGTAGTAGTTGACGTCGATG 14220489 Query 22931 GTTCTGTTCAAGTTTCTGGTC-ACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTA 22989 | |||| ||| || | | || | | || | ||||| || Sbjct 14220490 ATCTTGTT-AAGATTACGAACGACGACCTGGGTCACCTCGTGCAGCTTCCGGAAGTCATA 14220548 Query 22990 AACGCCCGA-TTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGC 23046 ||||| ||||| | ||||||| | || | ||| || || ||||| || || Sbjct 14220549 GGCGCCCTCGTTGTAGTCGACAAACTGCGGCAGCGCCAACGACGCCAGGTTGCACACAGC 14220608 Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATT---GCTACACTTTAT 23103 |||||| || | || |||||| || || ||||| || || || ||| | || Sbjct 14220609 CACCTCATCGGGCG-CGAGTACTCGACGATCTCGGTGCACAGGTTAGAGCTGCGG---AT 14220664 Query 23104 CGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGG 23163 ||||||| || |||||||||| || || ||||| || ||||| |||||| | || Sbjct 14220665 GGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCTTTGTACAGCATGAAGGG 14220724 Query 23164 CGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACG 23223 |||| |||||| ||| | ||||| ||| || ||||| | || || | | || Sbjct 14220725 GTTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCACAGCTTTTGCGCCTTGAG-CG 14220783 Query 23224 TCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGT 23282 || || ||| ||| || ||||||||||| |||||| || || || ||| | |||| Sbjct 14220784 TCTTGCGGCCCTTGCCCTCACGCTCGTACTTTTCGTACAAAGCCTCGAACTCGTCGCCGT 14220843 Query 23283 AACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTT 23342 | ||||| || ||||| || | | | || |||||||| |||| || || | Sbjct 14220844 AGCAGTCTGCTAGGCCAGGGCACTCGTTGGGGCACATGAGCGTCCAGTCGCCGTTCTTCT 14220903 Query 23343 CAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCA 23402 |||| || |||| || || || || |||||||| || ||| || ||||||||||| | Sbjct 14220904 CAACCCGCTTCATGAATAGGTCTGGGATCCATAGGGCCAGGAAAAGGTCGCGGGCGCGGA 14220963 Query 23403 CCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACG 23462 |||||| |||||| |||||| || || | || || |||||||| || ||||||| Sbjct 14220964 TCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACTCGAACACGTCGGCGTGCCACG 14221023 Query 23463 GCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGG 23522 |||| || || | |||||| ||||| || | ||| ||||| ||||| ||||||||||||| Sbjct 14221024 GCTCCAGATAGATGGCAAAGGCGCCGGGGCGCTTGTTGCCACCCTGGTCGACGTAACGGG 14221083 Query 23523 CCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCG 23582 ||||||||||| | || | |||||| ||||||| |||||||| | |||| ||| | Sbjct 14221084 CCGTGTTGTTGAAAACACGTAGCATGGGCACGATGCCGTTGGATGTGCCGTTGGTGCCGG 14221143 Query 23583 CCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATT 23642 | | || || | || || | | ||| | | || || || || ||| || | Sbjct 14221144 CGATGTAGGAGCCCGTGGCGCGGATGCGGTGGATATTGAGGCCGATACCGCCGGCCATCT 14221203 Query 23643 TCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGG 23702 | || ||||| || || ||| || ||||||||||| || ||||||||||| || || Sbjct 14221204 TGGAGATCATGGCACAGGTTTTGAGGGTGTCGTAGATACCATCGATGCTGTCGTCCTTCA 14221263 Query 23703 TCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCG 23762 | |||||| ||| ||||| |||| || || | |||||| |||| ||| || || | Sbjct 14221264 TGTCGACCAGGAAGCACGACGACAGCTGGGCCTGGGGCGTGCCGGCGTTGAAGAGAGTGG 14221323 Query 23763 GGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAA 23822 | |||||| || ||||| ||||||| || |||||||| |||| || || | Sbjct 14221324 GAGAGGCGTGGGTGAAGTACTTGCTCGACATGAGGTTGTACGTCTCGAGCACGCGCTCGA 14221383 Query 23823 TGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCG 23882 ||| || || || |||| ||||||||||| ||||||| || || | |||||| Sbjct 14221384 TGTTGTCGCCCCAGATGCCGACAGCGACGCGCATGATCATGTGCTGGGGGCGCTCGACGA 14221443 Query 23883 TGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCAT 23942 | ||||| | |||| ||| || || || | || || || || ||||| || | || Sbjct 14221444 TCTTGCCGTCGAGCTTGAGCAGGTACGAGCGCTCCAGGGTCTTGAAGCCAAAGTACTGAT 14221503 Query 23943 AGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 |||| ||||| || || | || |||||||| Sbjct 14221504 AGTTGAAGTCCCGGTCATAGACGATGGCCGA 14221534 >seq12 Length=9596913 Score = 127 bits (140), Expect = 2e-24 Identities = 230/335 (69%), Gaps = 10/335 (3%) Strand=Plus/Minus Query 57960 ACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGC 58019 || || ||| | |||| || || || |||||||| || ||||| ||||| || | Sbjct 6218700 ACCTTTGCCTCGCGGCTCATTGCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCC 6218641 Query 58020 TTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAAC 58079 ||||| | || || ||| ||||||| |||||||||||||| ||||| || || |||| Sbjct 6218640 TTTGCCTCCATCTTCTGGCTGAAGAAGCGCGGCCTGATGCCTGGCCTTACCTTCTCCAAC 6218581 Query 58080 GAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCAC 58139 ||| | || || || ||||||||||| || || || ||||| ||||| | | ||| ||| Sbjct 6218580 GAGCTCATCTCTCGTGACGAGGGTCTGCACACGGACTTTGCCTGCCTTCTCTTCTCCCAC 6218521 Query 58140 ATTGTCAATAAACCGACGCGGGATCGC-----ATCTTGGACATTATCACCGAGGCGGTCG 58194 || | ||||| | | | | || ||| ||| || ||| ||| || ||| Sbjct 6218520 AT----GAAGAACCGGCCCAGCA-AGCAAATGATCGAGGAGATCATCGTCGATGCTGTCA 6218466 Query 58195 CGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATG 58254 |||||| | ||||| | ||||| ||||| || || ||||||| |||||| Sbjct 6218465 AGATCGAGCAAGAGTTCCTGACCGAGGCCCTGCCTTGTGCGCTGCTCGGCATGAACTCGA 6218406 Query 58255 ATTTGATGTCAAAGTACATTGAGTTTGTTGCCGAC 58289 | | ||| ||||||| ||||| || || ||| Sbjct 6218405 ACCTCATGAAGCAGTACATCGAGTTCGTGGCAGAC 6218371 >seq67 Length=2709248 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||| || ||||| ||||| |||| || ||| | || Sbjct 458676 CATGCAGATCTTCGTGAAGACCTTGACTGGAAAAACCATCACGCTCGAAGTCGAATCATC 458617 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGA-ATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 ||| | | || | || ||| || | || ||| ||||| ||| | || || |||| Sbjct 458616 CGATACGATTGATAACGT-AAAGAGCAAGATCCAGGATAAGGAGGGCATCCCTCCGGACC 458558 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||||||| || || ||||| ||||| ||| |||| || || || || || | Sbjct 458557 AGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGTACCTTGTCGGACTACA 458498 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||| || || |||||||| || || || || | ||| | ||||| Sbjct 458497 ACATTCAGAAGGAGTCGACTCTCCACCTAGTGCTGCGTCTGCGTGGCGG 458449 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || || ||||| ||||| || |||||| | || || || | || Sbjct 459131 ATGCAGATTTTCGTCAAAACCCTGACGGGCAAGACCATCACCTTGGAGGTGGAGTCTTCG 459072 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||| || | || ||||||||| Sbjct 459071 GACACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAG 459012 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| || || ||| | || ||| | |||| | ||| || ||| Sbjct 459011 CAGCGCCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGTCGGACTCTTTCCGACTACAAC 458952 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || || || || || | || | ||||||| Sbjct 458951 ATCCAGAAGGAGAGCACCCTCCACCTCGTCCTCCGCCTCCGTGGCGGTA 458903 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 31215 TGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAAC 31274 |||| ||||| || |||||| |||| || || | ||||| | |||| | ||||| Sbjct 459337 TGACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCGATACCATCGACAACGTCAAGT 459278 Query 31275 AGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCA 31334 | || ||||||||| || | || |||||||||||||| || || |||||||||| Sbjct 459277 CCAAGATCCAGGACAAGGAGGGAATCCCTCCCGACCAGCAGCGCCTCATCTTCGCTGGCA 459218 Query 31335 AACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTC 31394 | || | || ||| ||| | || || ||||| |||||||| ||||| || | Sbjct 459217 AGCAACTCGAGGACGGCCGGACCCTCTCGGACTACAACATCCAAAAAGAGTCGACGCTGC 459158 Query 31395 ATCTGGTACT 31404 | || || || Sbjct 459157 ACCTCGTCCT 459148 >seq23 Length=7462253 Score = 82.4 bits (90), Expect = 7e-11 Identities = 115/160 (72%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || || || ||||| || || ||||| || |||||| | || || || Sbjct 7209767 CAATCATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGT 7209826 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 || ||||| |||| | ||||| | || ||||||||| ||| | || || | Sbjct 7209827 CGAGCGACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCC-CCTG 7209885 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||||| || || || || ||||||||| |||| || Sbjct 7209886 ACCAGCAGCGCCTGATCTTTGCGGGCAAACAGCTGGAGGA 7209925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765954233600