Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1 118 2e-21 seq12 102 1e-16 >seq1 Length=15654088 Score = 118 bits (130), Expect = 2e-21 Identities = 406/628 (65%), Gaps = 14/628 (2%) Strand=Plus/Plus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 ||||||||||| || | || ||| ||||| || |||| || ||||| | || | Sbjct 14220828 TCGAACTCGTCGCCGTAGCAGTCTGCTAGGCCAGGGCACTCGTTGGGGCACATGAGCGTC 14220887 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 79980 || || || | | || || || ||||| || || || || ||||| || || | || Sbjct 14220888 CAGTCGCCGTTCTTCTCAACCCGCTTCATGAATAGGTCTGGGATCCATAGGGCCAGGAAA 14220947 Query 79981 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 80040 || || | || | |||||| || || ||||| || ||||||||| | | Sbjct 14220948 AGGTCGCGGGCGCGGATCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACTCGAAC 14221007 Query 80041 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCC 80100 | || | |||||||| |||| || ||||| | | || || || ||||| || ||| Sbjct 14221008 ACGTCGGCGTGCCACGGCTCCAGATAGATGGCAAAGGCGCCGGGGCGCTTGTTGCCACCC 14221067 Query 80101 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 80160 || || | ||| | || ||||| || |||| | | ||| || | || || |||||| Sbjct 14221068 TGGTCGACGTAACGGGCCGTGTTGTTGAAAACACGTAGCATGGGCACGATGCCGTTGGAT 14221127 Query 80161 GTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGAC 80218 || || ||||| |||| ||| ||| || |||| || || | |||| || | Sbjct 14221128 GTGCCGTTGGTGCCGGCGATGTAGGAGCCCGTGGCGCGGATGCGGTGGATATTG--AGGC 14221185 Query 80219 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 80278 | || || || ||||| || ||||| | || || ||| | || || ||||| || | Sbjct 14221186 CGATACCGCCGGCCATCTTGGAGATCATGGCACAGGTTTTGAGGGTGTCGTAGATACCAT 14221245 Query 80279 CTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 80338 | ||||| || || |||||| | || || || |||| ||| | || | Sbjct 14221246 CGATGCTGTCGTCCTTCATGTCGACCAGGAAGCACGACGACAGCTGGGCCTGGGGCGTGC 14221305 Query 80339 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG 80398 | || || || | || ||||| ||||| || || | || |||| || ||||||| Sbjct 14221306 CGGCGTTGAAGAGAGTGGGAGAGGCGTGGGTGAAGTACTTGCTCGACATGAGGTTGTACG 14221365 Query 80399 TCT----CAATAGCT-GATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||| || ||| ||| | | ||| |||| || || ||||| ||||| | Sbjct 14221366 TCTCGAGCACGCGCTCGATGTTGTCGCCC-CAGATG----CCGACAGCGACGCGCATGAT 14221420 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTG 80481 ||||||||| || | || ||||||||| Sbjct 14221421 CATGTGCTGGGGGCGCTCGACGATCTTG 14221448 >seq12 Length=9596913 Score = 102 bits (112), Expect = 1e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 ||||||||||||||| | | || || |||||||| || || || || ||||| ||||| Sbjct 6218551 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTAAGGCCAGGCATCAGGCC 6218610 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093 ||||| || ||||| || ||||| ||||| | || |||||||| || || || || Sbjct 6218611 GCGCTTCTTCAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGC 6218670 Query 50094 GGCAAAGGCAA 50104 ||||||||||| Sbjct 6218671 GGCAAAGGCAA 6218681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268081731200