Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017-
06-19] 80 sequences; 53,151,282 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq1 107 3e-18
seq12 87.8 2e-12
>seq1
Length=15654088
Score = 107 bits (118), Expect = 3e-18
Identities = 406/629 (65%), Gaps = 16/629 (3%)
Strand=Plus/Plus
Query 71944 TCGAACTCGTCTCCCCAAGCATTGT-CTAATCCAGGACATTCATTCGGACACATCAATGA 72002
||||||||||| || | ||| | | ||| ||||| || || || || ||||| | |
Sbjct 14220828 TCGAACTCGTCGCCGTA-GCAGTCTGCTAGGCCAGGGCACTCGTTGGGGCACATGAGCGT 14220886
Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 72062
||| || || | | | || || ||||| || || || || ||||| || || | ||
Sbjct 14220887 CCAGTCGCCGTTCTTCTCAACCCGCTTCATGAATAGGTCTGGGATCCATAGGGCCAGGAA 14220946
Query 72063 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 72122
|| || | || | |||||| || || ||||| || ||||||||| | |
Sbjct 14220947 AAGGTCGCGGGCGCGGATCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACTCGAA 14221006
Query 72123 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCC 72182
| || | |||||||| |||| || ||||| | | || || || ||||| || ||
Sbjct 14221007 CACGTCGGCGTGCCACGGCTCCAGATAGATGGCAAAGGCGCCGGGGCGCTTGTTGCCACC 14221066
Query 72183 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 72242
||| || | ||| | || ||||| || |||| | | ||| || | || || |||||
Sbjct 14221067 CTGGTCGACGTAACGGGCCGTGTTGTTGAAAACACGTAGCATGGGCACGATGCCGTTGGA 14221126
Query 72243 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TGCTAATTGATAGA 72300
|| || ||||| |||| ||| ||| || |||| || || || ||||| |
Sbjct 14221127 TGTGCCGTTGGTGCCGGCGATGTAGGAGCCCGTGGCGCGGATGCGGTGGATATTGA--GG 14221184
Query 72301 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 72360
|| || || || ||||| || ||||| | || || ||| | || || ||||| ||
Sbjct 14221185 CCGATACCGCCGGCCATCTTGGAGATCATGGCACAGGTTTTGAGGGTGTCGTAGATACCA 14221244
Query 72361 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 72420
|| || || || ||| |||||| | || || || |||| ||| | ||
Sbjct 14221245 TCGATGCTGTCGTCCTTCATGTCGACCAGGAAGCACGACGACAGCTGGGCCTGGGGCGTG 14221304
Query 72421 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 72480
|| || || || | || ||||| ||||| || || | || |||| || ||||||
Sbjct 14221305 CCGGCGTTGAAGAGAGTGGGAGAGGCGTGGGTGAAGTACTTGCTCGACATGAGGTTGTAC 14221364
Query 72481 GTCT----CAATAGCT-GATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTA 72535
|||| || ||| ||| | | ||| |||| || || ||||| ||||| |
Sbjct 14221365 GTCTCGAGCACGCGCTCGATGTTGTCGCCC-CAGATG----CCGACAGCGACGCGCATGA 14221419
Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTG 72564
||| ||||| || | || |||||||||
Sbjct 14221420 TCATGTGCTGGGGGCGCTCGACGATCTTG 14221448
>seq12
Length=9596913
Score = 87.8 bits (96), Expect = 2e-12
Identities = 139/197 (71%), Gaps = 7/197 (4%)
Strand=Plus/Plus
Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138
|||||||||||| || | | || | |||||||| || || || || ||||| |||||
Sbjct 6218551 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTAAGGCCAGGCATCAGGCC 6218610
Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198
||||| || ||||| || || || ||||| | || |||||||| || || || ||
Sbjct 6218611 GCGCTTCTTCAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGC 6218670
Query 42199 CGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT-----ATCCACTTTTGA 42253
||||||||||| || | | || || ||| || ||| |||||||| |
Sbjct 6218671 GGCAAAGGCAATGAGCCGCGAGGCA-AAGGTCGACT-TCTTGTCGGAAATCCACTTCAAA 6218728
Query 42254 GCCCAATCGGCCTTCTT 42270
||||| |||||||||||
Sbjct 6218729 GCCCAGTCGGCCTTCTT 6218745
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671138528860800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |