Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1 107 3e-18 seq12 87.8 2e-12 >seq1 Length=15654088 Score = 107 bits (118), Expect = 3e-18 Identities = 406/629 (65%), Gaps = 16/629 (3%) Strand=Plus/Plus Query 71944 TCGAACTCGTCTCCCCAAGCATTGT-CTAATCCAGGACATTCATTCGGACACATCAATGA 72002 ||||||||||| || | ||| | | ||| ||||| || || || || ||||| | | Sbjct 14220828 TCGAACTCGTCGCCGTA-GCAGTCTGCTAGGCCAGGGCACTCGTTGGGGCACATGAGCGT 14220886 Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 72062 ||| || || | | | || || ||||| || || || || ||||| || || | || Sbjct 14220887 CCAGTCGCCGTTCTTCTCAACCCGCTTCATGAATAGGTCTGGGATCCATAGGGCCAGGAA 14220946 Query 72063 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 72122 || || | || | |||||| || || ||||| || ||||||||| | | Sbjct 14220947 AAGGTCGCGGGCGCGGATCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACTCGAA 14221006 Query 72123 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCC 72182 | || | |||||||| |||| || ||||| | | || || || ||||| || || Sbjct 14221007 CACGTCGGCGTGCCACGGCTCCAGATAGATGGCAAAGGCGCCGGGGCGCTTGTTGCCACC 14221066 Query 72183 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 72242 ||| || | ||| | || ||||| || |||| | | ||| || | || || ||||| Sbjct 14221067 CTGGTCGACGTAACGGGCCGTGTTGTTGAAAACACGTAGCATGGGCACGATGCCGTTGGA 14221126 Query 72243 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TGCTAATTGATAGA 72300 || || ||||| |||| ||| ||| || |||| || || || ||||| | Sbjct 14221127 TGTGCCGTTGGTGCCGGCGATGTAGGAGCCCGTGGCGCGGATGCGGTGGATATTGA--GG 14221184 Query 72301 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 72360 || || || || ||||| || ||||| | || || ||| | || || ||||| || Sbjct 14221185 CCGATACCGCCGGCCATCTTGGAGATCATGGCACAGGTTTTGAGGGTGTCGTAGATACCA 14221244 Query 72361 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 72420 || || || || ||| |||||| | || || || |||| ||| | || Sbjct 14221245 TCGATGCTGTCGTCCTTCATGTCGACCAGGAAGCACGACGACAGCTGGGCCTGGGGCGTG 14221304 Query 72421 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 72480 || || || || | || ||||| ||||| || || | || |||| || |||||| Sbjct 14221305 CCGGCGTTGAAGAGAGTGGGAGAGGCGTGGGTGAAGTACTTGCTCGACATGAGGTTGTAC 14221364 Query 72481 GTCT----CAATAGCT-GATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTA 72535 |||| || ||| ||| | | ||| |||| || || ||||| ||||| | Sbjct 14221365 GTCTCGAGCACGCGCTCGATGTTGTCGCCC-CAGATG----CCGACAGCGACGCGCATGA 14221419 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTG 72564 ||| ||||| || | || ||||||||| Sbjct 14221420 TCATGTGCTGGGGGCGCTCGACGATCTTG 14221448 >seq12 Length=9596913 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/197 (71%), Gaps = 7/197 (4%) Strand=Plus/Plus Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138 |||||||||||| || | | || | |||||||| || || || || ||||| ||||| Sbjct 6218551 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTAAGGCCAGGCATCAGGCC 6218610 Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198 ||||| || ||||| || || || ||||| | || |||||||| || || || || Sbjct 6218611 GCGCTTCTTCAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGC 6218670 Query 42199 CGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT-----ATCCACTTTTGA 42253 ||||||||||| || | | || || ||| || ||| |||||||| | Sbjct 6218671 GGCAAAGGCAATGAGCCGCGAGGCA-AAGGTCGACT-TCTTGTCGGAAATCCACTTCAAA 6218728 Query 42254 GCCCAATCGGCCTTCTT 42270 ||||| ||||||||||| Sbjct 6218729 GCCCAGTCGGCCTTCTT 6218745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138528860800