Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1 158 2e-33 seq12 123 4e-23 >seq1 Length=15654088 Score = 158 bits (174), Expect = 2e-33 Identities = 383/576 (66%), Gaps = 3/576 (1%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||||| ||| ||| | ||||| ||||| | | | ||| | | | || Sbjct 14221138 ACCAACGGCACATCCAACGGCATCGTGCCCATGCTACGTGTTTTCAACAACACGGCCCGT 14221079 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| ||||| ||||| || || || ||||| | ||| |||| |||| || ||| Sbjct 14221078 TACGTCGACCAGGGTGGCAACAAGCGCCCCGGCGCCTTTGCCATCTATCTGGAGCCGTGG 14221019 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||||| ||||| || || || |||| ||||||| ||| ||| || ||| || Sbjct 14221018 CACGCCGACGTGTTCGAGTTCCTCGACCTGCGCAAGAACCACGGCAAGGAGGAGATCCGC 14220959 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 ||| | ||| | || || || ||| | ||||| | ||||||||||| || | | Sbjct 14220958 GCCCGCGACCTTTTCCTGGCCCTATGGATCCCAGACCTATTCATGAAGCGGGTTGAGAAG 14220899 Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106 ||| |||||| || ||||||||| || || || || || | || |||| ||| Sbjct 14220898 AACGGCGACTGGACGCTCATGTGCCCCAACGAGTGCCCTGGCCTAGCAGACTGCTACGGC 14220839 Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGT 97165 || ||||| ||||| |||| ||||||| |||||| | || ||||| | Sbjct 14220838 GACGAGTTCGAGGCTTTGTACGAAAAGTACGAGCGTGAGGGCAAGGGCCGCAAGACG-CT 14220780 Query 97166 CGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTA 97225 | | || | | | |||||| | |||||| | ||| ||| |||||||| | || | Sbjct 14220779 CAAGGCGCAAAAGCTGTGGTATGCCATCCTCGAGGCCCAGACCGAGACTGGCAACCCCTT 14220720 Query 97226 CATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAA 97285 ||| || ||||| || | || ||||| |||||||| || ||||||||||| Sbjct 14220719 CATGCTGTACAAAGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCG 14220660 Query 97286 GGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTG 97345 |||| || |||||||| || || || |||||| | | || || ||| ||| || || Sbjct 14220659 CAGCTCTAACCTGTGCACCGAGATCGTCGAGTAC-TCGCGCCCGATGAGGTGGCTGTGTG 14220601 Query 97346 CGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGA 97381 | ||||| ||| | ||||| ||||||| || Sbjct 14220600 CAACCTGGCGTCGTTGGCGCTGCCGCAGTTTGTCGA 14220565 >seq12 Length=9596913 Score = 123 bits (136), Expect = 4e-23 Identities = 301/446 (67%), Gaps = 25/446 (6%) Strand=Plus/Minus Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 || || |||||||| ||||| |||||||| ||| ||||| ||||||| ||||| Sbjct 6218679 GCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTG 6218620 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 ||||||||||| || ||||| || || || | |||||| | || ||||| |||||| Sbjct 6218619 AAGAAGCGCGGCCTGATGCCTGGCCTTACCTTCTCCAACGAGCTCATCTCTCGTGACGAG 6218560 Query 125553 GGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT--ATCTGCGTCCCGAGTGC 125609 || || ||| ||||||||| || || || || || | | || ||| || Sbjct 6218559 GGTCTGCACACGGACTTTGCCTGCCTTCTCTTCTCCCACATGAAGAACCGGCCC---AGC 6218503 Query 125610 AGATCCAGCGAT-GAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGA 125668 | | | | ||| || || ||||| || |||||| || | ||| || ||||| Sbjct 6218502 A-AGCAAATGATCGAGGAGATCATC------GT---CGATGCTGTCAAGATCGAGCAAGA 6218453 Query 125669 GTTTCTAACCGAATCCCTACC-GGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727 ||| || ||||| |||| || || || || | |||||||||| || || ||| Sbjct 6218452 GTTCCTGACCGAGGCCCTGCCTTGTGCGC-TGCTCGGCATGAACTCGAACCTCATGAAGC 6218394 Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTT---GATTGGCCGCAAGATTT 125784 ||||||| ||||| |||||||| || || ||| | | || || |||| | | Sbjct 6218393 AGTACATCGAGTTCGTGGCAGACCGCCTCCTGGTTGCTCTCGGGAATG---ACAAGGTCT 6218337 Query 125785 ACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACT 125844 || ||| || ||||| || |||||| | ||| || || | || |||||||||| Sbjct 6218336 ACCGCGCATCCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGGCGGCAAGACCAACT 6218277 Query 125845 TTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | ||||| ||| || |||||||| Sbjct 6218276 TCTTCGAAAAGCGCGTGGGCGAGTAC 6218251 Score = 111 bits (122), Expect = 2e-19 Identities = 201/290 (69%), Gaps = 13/290 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| |||||| ||||||| || ||||| | || ||| |||| || Sbjct 6219157 ATCTGGCAGATGTACAAGAAGGCTGAGGCCTCGTTCTGGACAGCTGAGGAGATCGACTTG 6219098 Query 125079 TCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 ||||||||||| |||| ||| | || | || || || |||| | || || || Sbjct 6219097 TCCAAGGACCTCCACGACTGGAACAACAAGCTTAAC-GACGATGAGAAGTACTTCATCTC 6219039 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACG 125197 |||||| | |||||||||||| |||| ||||||||||| || ||| || || Sbjct 6219038 GCACATCCTCGCCTTCTTTGCC-------ATGGCATCGTCAACGAGAACCTGGTGGAGCG 6218986 Query 125198 ATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATG 125255 ||| ||| | ||| | || |||| ||||| || || || || |||||| Sbjct 6218985 CTTCAGCGGCGAG--GTCCAGGTCCCTGAGGCACGTTGCTTCTATGGGTTTCAGATCATG 6218928 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 || |||||| | |||||||| | ||||| ||||| |||| ||||| Sbjct 6218927 ATGGAGAACATCCACTCGGAGACTTACTCGCTCCTGATCGACACCTACAT 6218878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058458940800