Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq45 105 1e-18 >seq45 Length=5506958 Score = 105 bits (116), Expect = 1e-18 Identities = 86/102 (84%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || |||||||| || ||||| ||||| || | Sbjct 1597433 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACAAAGCCCGCCA 1597491 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||| |||||||| ||||||||||| ||||||||| | |||| Sbjct 1597492 TCCGCCGTCTGGCGCGTCGTGGTGGTGTCAAGCGTATTTCTG 1597533 Score = 89.7 bits (98), Expect = 8e-14 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| |||| |||| ||||| |||||| || |||||||| || | Sbjct 4629690 TGATCTACGAGGAGACACGTGGTGTTCTGAAGTCCTTCCTTGAGGGCGTTATCCGCGACG 4629749 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 || || || ||||||||||| || | ||||||||||| || | || ||||||| | Sbjct 4629750 CTGTCACATACACCGAGCACGCCAAGAGGAAGACTGTCACGTCACTTGACGTCGTCTACG 4629809 Query 16656 CATTGAAACGTCAAGGCCG 16674 | |||| || |||||||| Sbjct 4629810 CCCTGAAGCGACAAGGCCG 4629828 Score = 84.2 bits (92), Expect = 3e-12 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 16529 TCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATC 16588 |||| | || | || || |||| |||| ||| | ||| ||||||| || || ||| Sbjct 1597607 TCTGCAGTGATTTACGAGGAGACCCGTGGTGTCCTCAAGTCCTTCCTCGAGGGTGTCATC 1597666 Query 16589 CATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATC 16648 | ||| || || ||| ||||||||||| || || ||||| |||||||| | ||| | Sbjct 1597667 CGTGACGCCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCGCTCGATGTT 1597726 Query 16649 GTCTATGCATTGAAACGTCAAGGCCG 16674 |||||||| |||| || || ||||| Sbjct 1597727 GTCTATGCCCTGAAGCGCCAGGGCCG 1597752 Score = 80.6 bits (88), Expect = 4e-11 Identities = 80/101 (79%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || ||||| || || || |||||||| || || Sbjct 4629516 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATTACCAAGCCCGCAAT 4629574 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 | ||||| || ||||||||||| || |||||| | |||| Sbjct 4629575 TAGGCGTCTAGCCCGTCGTGGTGGTGTTAAGCGTATTTCTG 4629615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075126855440