Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1 349 9e-91 >seq1 Length=15654088 Score = 349 bits (386), Expect = 9e-91 Identities = 1063/1628 (65%), Gaps = 31/1628 (2%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||| | || || | | ||| || || || | | | ||| |||| || Sbjct 14221339 TTCACCCACGCCTCTCCCACTCTCTTCAACGCCGGCACGCCCCAGGCCCAGCTGTCGTCG 14221280 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | ||||||||||| |||||| ||||||| ||||| || || | Sbjct 14221279 TGCTTCCTGGTCGACATGAAGGACGACAGCATCGATGGTATCTACGACACCCTCAAAACC 14221220 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 ||||| | || ||||||| || ||||| || || | |||||| | || || Sbjct 14221219 TGTGCCATGATCTCCAAGATGGCCGGCGGTATCGGCCTCAATATCCACCGCATCCGCGCC 14221160 Query 363727 CAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 | | ||||| |||||| | || | | || || || | || |||||||| || Sbjct 14221159 ACGGGCTCCTACATCGCCGGCACCAACGGCACA-TCCAACGGCATCGTGCCCATGCTACG 14221101 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 ||| || |||| || || | ||||||||||||||||| |||||| || || || Sbjct 14221100 TGTTTTCAACAACACGGCCCGTTACGTCGACCAGGGTGGCAACAAGCGCCCCGGCGCCTT 14221041 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA 363905 ||| || ||||| ||||| || ||||| | || ||||| || || || || || || Sbjct 14221040 TGCCATCTATCTGGAGCCGTGGCACGCCGACGTGTTCGAGTTCCTCGACCTGCGCAAGAA 14220981 Query 363906 CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCA 363965 | || || ||||| | || || || || || ||| || || ||| | | |||| Sbjct 14220980 CCACGGCAAGGAGGAGATCCGCGCCCGCGACCTTTTCCTGGCCCTATGGATCCCAGACCT 14220921 Query 363966 TTTTATGAAGCGCGTGGAGGCAGGTAAG--AATTGGTCACTCTTTTGCCCACACGAATGT 364023 || |||||||| || ||| | | | | | ||| | ||| | ||||| |||| || Sbjct 14220920 ATTCATGAAGCGGGTTGAG--AAGAACGGCGACTGGACGCTCATGTGCCCCAACGAGTGC 14220863 Query 364024 CCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCG 364083 || || || | || | || ||||| | | ||| | ||||||||||| || Sbjct 14220862 CCTGGCCTAGCAGACTGCTACGGCGACGAGTTCGAGGCTTTGTACGAAAAGTACGAGCGT 14220803 Query 364084 GAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCG 364143 ||||| |||| || ||||| | || || ||||| |||| ||||||| | || | Sbjct 14220802 GAGGGCAAGGGCCGCAAGACGCTCAAGGCGCAAAAGCTGTGGTATGCCATCCTCGAGGCC 14220743 Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 |||| ||||| || | |||| ||| |||||||||| |||||||||||| |||| Sbjct 14220742 CAGACCGAGACTGGCAACCCCTTCATGCTGTACAAAGACCACTGCAACCGCAAGAGCAAC 14220683 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATACAC 364262 ||| || |||| || || | || |||| | ||||| || |||||||| | || ||| Sbjct 14220682 CAGAAGAACCTGGGCACCA-TCCGCAGCTCTAACCTGTGCACCGAGATCGTCGAGTAC-T 14220625 Query 364263 CGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT--- 364319 ||| ||||| ||| || || || ||||| |||||| | ||||| ||| |||||| Sbjct 14220624 CGCGCCCGATGAGGTGGCTGTGTGCAACCTGGCGTCGTTGGCGCTGCCGCAGTTTGTCGA 14220565 Query 364320 ---AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTA--TCATGCTACT 364374 || || || | | |||| || | | || | || || ||| | || | | | Sbjct 14220564 CTACAACGAGGGCGCCTATGACTTCCGGAAGCTGCACGAGGTGACCCAGGTCGTCGT--T 14220507 Query 364375 TGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG----AGC 364429 | ||||| ||||| | |||||| || || || || | | || || || ||| Sbjct 14220506 CGTAATCTTAACAAGATCATCGACGTCAACTACTACCCGGTCCAGGAGGCTCGTAACAGC 14220447 Query 364430 GTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTA 364489 || |||| || || || || || || || || ||||| || || || | || Sbjct 14220446 -----AACCTGCGCCACCGGCCCATCGGCCTAGGCGTGCAGGGTCTGGCCGATGCCTTCC 14220392 Query 364490 TGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTG 364549 | ||| || | || || || || || ||||| | || || ||| ||||||||| Sbjct 14220391 TAGCGCTGCGCCTGCCCTTCGAGTCTCCCGAGGCTCGCGAGCTCAACAAGCAGATCTTTG 14220332 Query 364550 AAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGT 364609 | || || || ||||| |||| || ||||| || |||| |||| | | Sbjct 14220331 AGACCATCTACCACGCCGCCCTGACCGCCTCGTGCGAGCTGGCGCGCGAGCAGGGCACCT 14220272 Query 364610 ACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATG 364669 |||| || || ||||| || ||| | |||||||| | | |||| || | ||||| | Sbjct 14220271 ACTCGACATACGAGGGCTCGCCTGTGTCGCAGGGCATCCTGCAGTACGACATGTGGAACG 14220212 Query 364670 TCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTA 364729 ||| ||| || | | ||| ||||||| |||| | || | ||| |||| ||| Sbjct 14220211 TCAAGCCGTCGGAGCTCTGGGACTGGGAGTCGCTCAAGGCGGACATCAAGCAGCACGGTG 14220152 Query 364730 CTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAA 364789 |||||||| || || |||||||||||||| || || | ||||| || || | Sbjct 14220151 TGCGCAACTCGCTGCTTGTGGCGCCCATGCCCACCGCCAGCACGTCGCAGATTCTGGGCA 14220092 Query 364790 ACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAG 364849 |||||||||||||||| || | || ||| | || || || || || |||| | Sbjct 14220091 ACAACGAGTGCTTCGAGCCCTACACGTCCAACATCTACCAGCGTCGCGTGCTCGCCGGCG 14220032 Query 364850 AATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTG 364909 | || | ||| || || | || | ||||| || ||| | || ||||| | Sbjct 14220031 AGTTCCAGGTCGTCAACCCATGGCTCCTGAAGGACCTGGTCGAGCTTGGCTTGTGGTCCG 14219972 Query 364910 ACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACAT-TCCAGGATTT 364968 ||| |||||||||| |||||||||| || || | |||||||| |||| | | Sbjct 14219971 ACAACATGAAGAACCGCATCATCGCCGAGGGCGGCTCCATCCAGAACATCGCCAGCA-TC 14219913 Query 364969 CCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATT 365028 || || ||| |||| | ||||| || || ||||| || || ||| || || | Sbjct 14219912 CCCGAGGATACCAAGCGCCTGTACAAGACGGTCTGGGAGATCTCGCAGCGCACCGTCGTC 14219853 Query 365029 GATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATG 365088 | |||||||| || ||||| || || ||| || |||||| | ||| | |||| Sbjct 14219852 CAGATGGCGGCTGACCGCGGCGCCTTCATCGACCAATCGCAGTCGCTCAACATCCACATG 14219793 Query 365089 ACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTT 365148 |||| ||| | |||| | || || ||||| ||| ||| ||||| || || Sbjct 14219792 CGCGAGCCCACCATGGGCAAGATAACGTCTATGCACTTCGCCGGCTGGAAGCTAGGCCTC 14219733 Query 365149 AAGACAGG 365156 ||||| || Sbjct 14219732 AAGACGGG 14219725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352264062560