Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gaeumannomyces_20sp._20JS-464_20[genbank_20GCA_5F002197995.1_202017- 06-19] 80 sequences; 53,151,282 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq55 140 2e-28 seq10 140 2e-28 seq23 98.7 7e-16 seq67 95.1 8e-15 >seq55 Length=2475 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1786 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1845 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1846 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1880 >seq10 Length=40229 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 7278 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 7337 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 7338 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 7372 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 14822 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 14881 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 14882 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 14916 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 24041 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 24100 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 24101 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 24135 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 32426 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 32485 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 32486 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 32520 >seq23 Length=7462253 Score = 98.7 bits (108), Expect = 7e-16 Identities = 164/234 (70%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || ||||| ||| | || || ||||||||||| || || ||||| || || Sbjct 7209998 ACCACCACGCAGACGCAGCACTAGGTGTAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGA 7209939 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || || | || || | ||||| || ||||| || ||||| || || || | ||| Sbjct 7209938 CAGCGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAGATCAGGCGCTGCTGGTCAG-GGG 7209880 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTAT--CTCCACTTTCA 38267 || ||| || |||||| || || ||| ||||| | || || | ||| || || Sbjct 7209879 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGCTCGAC--TCC 7209822 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || || | || ||||| || ||||| | ||| ||||| || ||||||||| || Sbjct 7209821 ACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGATT 7209768 >seq67 Length=2709248 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||| | |||||| || || ||||||||||| || || |||||||| ||| Sbjct 458677 CCACCGCGCAGACGAAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAC 458736 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || |||| || | || || || ||||| || | ||||| ||||| | |||| Sbjct 458737 AGAGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAAACGTTGCTGATCCGGGGGG 458796 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || ||||| ||| || |||||| || | || || ||| || ||| Sbjct 458797 ATACCCTCCTTGTCTTGAATCTTCGACTTCACGTTGTCGATCGTGTCTGATGACTCGACT 458856 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || || | || || ||||| |||||||| Sbjct 458857 TCCAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 458903 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || || ||||||||||| || || ||||| || || | | || |||| || | || Sbjct 458929 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAAAGAGTCCGACCGTCCTCGAGCTGC 458988 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || ||||| || || ||||| || || |||| |||| || || |||||| ||| || Sbjct 458989 TTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTC 459048 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||| ||||| | || || || | || || || || || || || || |||||| Sbjct 459049 GACTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTGCCCGTC 459108 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 | |||||| ||||| |||||||| Sbjct 459109 AGGGTTTTGACGAAAATCTGCAT 459131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946873426480